RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 J3KRW8 73 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 PRM2P04554 102 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 RAB5CP51148 216 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 SUMO1P63165 101 aaKnown RBP11.32□□□□□ -0.6
UPF3A-208ENST00000484246 GNG5P63218 68 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 ANXA2RQ3ZCQ2 193 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 Q6AWC8 147 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 SLC51BQ86UW2 128 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 IQCF2Q8IXL9 164 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 C9orf62Q8N4C0 152 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 TCEAL7Q9BRU2 100 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 ATG101Q9BSB4 218 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 EPDR1Q9UM22 224 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 RYR2Q92736 4967 aa11.32□□□□□ -0.6
UPF3A-208ENST00000484246 A0A1B0GVG6 124 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 FAM74A7A6NL05 159 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 FGF8P55075 233 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-208ENST00000484246 ZFP69Q49AA0 526 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 CCDC28AQ8IWP9 274 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 LINC00612Q8N6U2 182 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 CYB561D1Q8N8Q1 229 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 ZNF680Q8NEM1 530 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 FAM213BQ8TBF2 198 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 C2CD4CQ8TF44 421 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 TMPRSS5Q9H3S3 457 aa11.31□□□□□ -0.6
UPF3A-208ENST00000484246 K7EQM0 130 aa11.3□□□□□ -0.6
UPF3A-208ENST00000484246 IGLV2-11P01706 119 aa11.3□□□□□ -0.6
UPF3A-208ENST00000484246 RNASE4P34096 147 aaKnown RBP11.3□□□□□ -0.6
UPF3A-208ENST00000484246 TMEM75Q8N9X5 138 aa11.3□□□□□ -0.6
UPF3A-208ENST00000484246 RPH3ALQ9UNE2 315 aa11.3□□□□□ -0.6
UPF3A-208ENST00000484246 TIMM8BQ9Y5J9 83 aaPredicted RBP11.3□□□□□ -0.6
UPF3A-208ENST00000484246 TRAV8-1A0A0A6YYK1 113 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 TRAV1-1A0A0B4J248 108 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 DAZ2Q13117 558 aaKnown RBP11.29□□□□□ -0.6
UPF3A-208ENST00000484246 IBA57Q5T440 356 aaKnown RBP11.29□□□□□ -0.6
UPF3A-208ENST00000484246 ZNF767PQ75MW2 155 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 EIF4E3Q8N5X7 224 aaKnown RBP11.29□□□□□ -0.6
UPF3A-208ENST00000484246 C11orf72Q8NBR9 251 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 HIST1H2BAQ96A08 127 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 TVP23CQ96ET8 276 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 FAM210BQ96KR6 192 aa11.29□□□□□ -0.6
UPF3A-208ENST00000484246 DEFB131BA0A096LNP1 70 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 HTN1P15515 57 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 SULT1A2P50226 295 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 DAD1P61803 113 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 SFT2D1Q8WV19 159 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 NDFIP1Q9BT67 221 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 SACSQ9NZJ4 4579 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 ALMS1Q8TCU4 4167 aa11.28□□□□□ -0.6
UPF3A-208ENST00000484246 IGHV1OR15-1A0A075B7D0 117 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 PEX7O00628 323 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 H2AFB1P0C5Y9 115 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 PPT1P50897 306 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 UBE2G2P60604 165 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 FLI1Q01543 452 aaPredicted RBP11.27□□□□□ -0.61
UPF3A-208ENST00000484246 TDRG1Q3Y452 100 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 TREM1Q9NP99 234 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 PSG8Q9UQ74 426 aa11.27□□□□□ -0.61
UPF3A-208ENST00000484246 PLECQ15149 4684 aaKnown RBP11.27□□□□□ -0.61
UPF3A-208ENST00000484246 RGS13O14921 159 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 IFNA7P01567 189 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 TCL1AP56279 114 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 LINC00476Q8WZB0 136 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 C18orf15Q96N68 181 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 TP53TG3Q9ULZ0 132 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 DNAH1Q9P2D7 4330 aa11.26□□□□□ -0.61
UPF3A-208ENST00000484246 TRAV21A0A0B4J279 112 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 TRBV6-1A0A0K0K1D8 114 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 CBY3A6NI87 242 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 SNURFLB1AK76 121 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 SAPCD1Q5SSQ6 148 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 Q6ZQT7 251 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 NOP10Q9NPE3 64 aaKnown RBP11.25□□□□□ -0.61
UPF3A-208ENST00000484246 APLNQ9ULZ1 77 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 KLF12Q9Y4X4 402 aa11.25□□□□□ -0.61
UPF3A-208ENST00000484246 IGHV4-4A0A075B6R2 117 aa11.24□□□□□ -0.61
UPF3A-208ENST00000484246 F6UZH7 168 aa11.24□□□□□ -0.61
UPF3A-208ENST00000484246 COX8CQ7Z4L0 72 aa11.24□□□□□ -0.61
UPF3A-208ENST00000484246 Q86TA4 180 aa11.24□□□□□ -0.61
UPF3A-208ENST00000484246 GSN-AS1Q9NRJ2 163 aa11.24□□□□□ -0.61
UPF3A-208ENST00000484246 IGLL5B9A064 214 aa11.23□□□□□ -0.61
UPF3A-208ENST00000484246 PAGE4O60829 102 aa11.23□□□□□ -0.61
UPF3A-208ENST00000484246 ATP5G3P48201 142 aa11.23□□□□□ -0.61
UPF3A-208ENST00000484246 SGK494Q96LW2 274 aa11.23□□□□□ -0.61
UPF3A-208ENST00000484246 MANBALQ9NQG1 85 aa11.23□□□□□ -0.61
UPF3A-208ENST00000484246 TENM2Q9NT68 2774 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 LYSTQ99698 3801 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 TRGV11A0A075B6L2 103 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 TEX46H3BTG2 121 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 SPINK4O60575 86 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 ATP5G1P05496 136 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 DEFB130BP0DP73 79 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 DEFB130AP0DP74 79 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 ZNF415Q09FC8 603 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 LGALS9BQ3B8N2 356 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 SMUG1Q53HV7 270 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 CST9LP1Q5W188 147 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 LGALS9CQ6DKI2 356 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 FAM159AQ6UWV7 190 aa11.22□□□□□ -0.61
UPF3A-208ENST00000484246 PRNTQ86SH4 94 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms