RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CSTL1Q9H114 145 aa11.44□□□□□ -0.58
HDAC6-220ENST00000477528 AGPAT4-IT1Q9H0P7 198 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 RNF223E7ERA6 249 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 ZNF418Q8TF45 676 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-220ENST00000477528 TRBV6-1A0A0K0K1D8 114 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 J3QLI3 93 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 IGHV4-39P01824 125 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 STPG4Q8N801 248 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 SIRPDQ9H106 197 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 CHD7Q9P2D1 2997 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 IGHV4-61A0A0C4DH41 118 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 JMJD8Q96S16 334 aa11.43□□□□□ -0.58
HDAC6-220ENST00000477528 LGALS9BQ3B8N2 356 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 LGALS9CQ6DKI2 356 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 FANCD2OSQ96PS1 177 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 ARFGEF3Q5TH69 2177 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 CRYGBP07316 175 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 ZNF815PA8K554 130 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 ODF3BA8MYP8 253 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 PF4P02776 101 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 IGHV7-4-1A0A0J9YVY3 117 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 BUB3O43684 328 aa11.42□□□□□ -0.58
HDAC6-220ENST00000477528 CD5LO43866 347 aa11.41□□□□□ -0.58
HDAC6-220ENST00000477528 BCL6BQ8N143 479 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-220ENST00000477528 C19orf71A6NCJ1 209 aa11.41□□□□□ -0.58
HDAC6-220ENST00000477528 CD300EQ496F6 205 aaPredicted RBP11.41□□□□□ -0.58
HDAC6-220ENST00000477528 LENEPQ9Y5L5 61 aa11.41□□□□□ -0.58
HDAC6-220ENST00000477528 HCFC1P51610 2035 aa11.41□□□□□ -0.58
HDAC6-220ENST00000477528 C21orf62-AS1Q17RA5 79 aa11.41□□□□□ -0.58
HDAC6-220ENST00000477528 COPS9Q8WXC6 57 aa11.41□□□□□ -0.58
HDAC6-220ENST00000477528 SUMO2P61956 95 aaKnown RBP11.4□□□□□ -0.58
HDAC6-220ENST00000477528 ANXA2RQ3ZCQ2 193 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 C5orf56Q8N8D9 126 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 COX11Q9Y6N1 276 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 H3BRM9 83 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 APOMO95445 188 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 UBE2V1Q13404 147 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 OR5A1Q8NGJ0 315 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 ZNF747Q9BV97 191 aa11.4□□□□□ -0.58
HDAC6-220ENST00000477528 MAPK1IP1LQ8NDC0 245 aa11.39□□□□□ -0.59
HDAC6-220ENST00000477528 A0A087WWL8 130 aa11.39□□□□□ -0.59
HDAC6-220ENST00000477528 COX8AP10176 69 aa11.39□□□□□ -0.59
HDAC6-220ENST00000477528 MAJINQ3KP22 176 aa11.39□□□□□ -0.59
HDAC6-220ENST00000477528 C11orf44Q8N8P7 122 aa11.39□□□□□ -0.59
HDAC6-220ENST00000477528 CFHR4Q92496 578 aa11.39□□□□□ -0.59
HDAC6-220ENST00000477528 C10orf105Q8TEF2 133 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 LY6LH3BQJ8 138 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 CD28P10747 220 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 PAX2Q02962 417 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 ZNF876PQ49A33 203 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 LCNL1Q6ZST4 164 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 TMEM101Q96IK0 257 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 BEX4Q9NWD9 120 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-220ENST00000477528 ZNF415Q09FC8 603 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 TDRG1Q3Y452 100 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 PIEZO2Q9H5I5 2752 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 SAMD5Q5TGI4 173 aa11.38□□□□□ -0.59
HDAC6-220ENST00000477528 TRAV26-2A0A0B4J265 109 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 IGHV4-38-2P0DP08 117 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 MEIG1Q5JSS6 88 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 Q5PR19 223 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 KLHL30-AS1Q8NEE0 82 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 SPG11Q96JI7 2443 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 ATP6V0BQ99437 205 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 TRGV2A0A075B6R0 118 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 IGHV4-30-2A0A087WSY4 118 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 HOXA3O43365 443 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-220ENST00000477528 C1orf159Q96HA4 380 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 MLST8Q9BVC4 326 aa11.37□□□□□ -0.59
HDAC6-220ENST00000477528 FOXE3Q13461 319 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 C2orf66Q6UXQ4 117 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 KIR3DS1Q14943 382 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 ZNF479Q96JC4 524 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 SMIM2Q9BVW6 85 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 FAM208BQ5VWN6 2430 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 A0A1B0GXF2 115 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 CMC4P56277 68 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-220ENST00000477528 DEFB131AP59861 70 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 MBD6Q96DN6 1003 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 CHAC1Q9BUX1 264 aa11.36□□□□□ -0.59
HDAC6-220ENST00000477528 ELANEP08246 267 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 C16orf54Q6UWD8 224 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 CUL9Q8IWT3 2517 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 SPINK13Q1W4C9 94 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 DEFB112Q30KQ8 113 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 DEFB104AQ8WTQ1 72 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 PCP4P48539 62 aa11.35□□□□□ -0.59
HDAC6-220ENST00000477528 A0A1B0GWB2 263 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 IGHV3-73A0A0B4J1V6 119 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 TNFRSF13BO14836 293 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-220ENST00000477528 IGHV4-59P01825 116 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 LMO4P61968 165 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 LINC00322Q6ZN03 302 aaPredicted RBP11.34□□□□□ -0.59
HDAC6-220ENST00000477528 TRPT1Q86TN4 253 aaKnown RBP11.34□□□□□ -0.59
HDAC6-220ENST00000477528 ACACBO00763 2458 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 TLN1Q9Y490 2541 aaKnown RBP11.34□□□□□ -0.59
HDAC6-220ENST00000477528 IGHV1OR15-1A0A075B7D0 117 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 NAA38Q9BRA0 125 aaKnown RBP11.34□□□□□ -0.59
HDAC6-220ENST00000477528 INSP01308 110 aa11.34□□□□□ -0.59
HDAC6-220ENST00000477528 CDKN1BP46527 198 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms