RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 H7BYZ3 331 aa12.71□□□□□ -0.37
COL7A1-205ENST00000465238 RNASE4P34096 147 aaKnown RBP12.71□□□□□ -0.37
COL7A1-205ENST00000465238 PPT1P50897 306 aa12.71□□□□□ -0.37
COL7A1-205ENST00000465238 CST9LP1Q5W188 147 aa12.71□□□□□ -0.37
COL7A1-205ENST00000465238 LENEPQ9Y5L5 61 aa12.71□□□□□ -0.37
COL7A1-205ENST00000465238 LOC102723971A0A1B0GUV8 181 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 KLLNB2CW77 178 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 PAGE4O60829 102 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 HTN1P15515 57 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 EMP1P54849 157 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 TAS2R60P59551 318 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 ZFAND2AQ8N6M9 145 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 CYB561D1Q8N8Q1 229 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 ATG101Q9BSB4 218 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 ARL2-SNX15V9GYD0 113 aa12.7□□□□□ -0.38
COL7A1-205ENST00000465238 TRAV8-1A0A0A6YYK1 113 aa12.69□□□□□ -0.38
COL7A1-205ENST00000465238 TRAV1-1A0A0B4J248 108 aa12.69□□□□□ -0.38
COL7A1-205ENST00000465238 F6UZH7 168 aa12.69□□□□□ -0.38
COL7A1-205ENST00000465238 BTN1A1Q13410 526 aa12.69□□□□□ -0.38
COL7A1-205ENST00000465238 ALKAL2Q6UX46 152 aa12.69□□□□□ -0.38
COL7A1-205ENST00000465238 FBLL1A6NHQ2 334 aaKnown RBP12.68□□□□□ -0.38
COL7A1-205ENST00000465238 IGLL5B9A064 214 aa12.68□□□□□ -0.38
COL7A1-205ENST00000465238 CCDC28AQ8IWP9 274 aa12.68□□□□□ -0.38
COL7A1-205ENST00000465238 HIST1H2BAQ96A08 127 aa12.68□□□□□ -0.38
COL7A1-205ENST00000465238 SGK494Q96LW2 274 aa12.68□□□□□ -0.38
COL7A1-205ENST00000465238 NDFIP1Q9BT67 221 aa12.68□□□□□ -0.38
COL7A1-205ENST00000465238 PSG8Q9UQ74 426 aa12.68□□□□□ -0.38
COL7A1-205ENST00000465238 PEX7O00628 323 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 PRM2P04554 102 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 TMEM75Q8N9X5 138 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 PYGO2Q9BRQ0 406 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 TCEAL7Q9BRU2 100 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 TREM1Q9NP99 234 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 APLNQ9ULZ1 77 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 DNAH6Q9C0G6 4158 aa12.67□□□□□ -0.38
COL7A1-205ENST00000465238 ZNF324O75467 553 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-205ENST00000465238 SPART-AS1P0CW21 52 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 AZU1P20160 251 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 ATP5G3P48201 142 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 CCL20P78556 96 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 FLI1Q01543 452 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-205ENST00000465238 PRR9Q5T870 116 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 PRNTQ86SH4 94 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 MANBALQ9NQG1 85 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 GNG13Q9P2W3 67 aa12.66□□□□□ -0.38
COL7A1-205ENST00000465238 TRAV10A0A0B4J240 114 aa12.65□□□□□ -0.38
COL7A1-205ENST00000465238 RGS13O14921 159 aa12.65□□□□□ -0.38
COL7A1-205ENST00000465238 BLOC1S1P78537 153 aa12.65□□□□□ -0.38
COL7A1-205ENST00000465238 ZNF493Q6ZR52 646 aa12.65□□□□□ -0.38
COL7A1-205ENST00000465238 C16orf74Q96GX8 76 aa12.65□□□□□ -0.38
COL7A1-205ENST00000465238 LINC00479Q96M42 142 aa12.65□□□□□ -0.38
COL7A1-205ENST00000465238 TRAV34A0A0B4J273 112 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 TEX48A0A1B0GUV7 120 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 IFNA1P01562 189 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 IGLV2-11P01706 119 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 SAPCD1Q5SSQ6 148 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 Q6ZTC4 211 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 TMEM263Q8WUH6 116 aaKnown RBP12.64□□□□□ -0.39
COL7A1-205ENST00000465238 TVP23CQ96ET8 276 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 CELA1Q9UNI1 258 aa12.64□□□□□ -0.39
COL7A1-205ENST00000465238 HECTD4Q9Y4D8 3996 aa12.63□□□□□ -0.39
COL7A1-205ENST00000465238 UBE2G1P62253 170 aa12.63□□□□□ -0.39
COL7A1-205ENST00000465238 FAM222AQ5U5X8 452 aa12.63□□□□□ -0.39
COL7A1-205ENST00000465238 EIF4E3Q8N5X7 224 aaKnown RBP12.63□□□□□ -0.39
COL7A1-205ENST00000465238 LINC00467Q9BRT7 94 aa12.63□□□□□ -0.39
COL7A1-205ENST00000465238 DKK2Q9UBU2 259 aa12.63□□□□□ -0.39
COL7A1-205ENST00000465238 IGHV1OR15-1A0A075B7D0 117 aa12.62□□□□□ -0.39
COL7A1-205ENST00000465238 CBY3A6NI87 242 aa12.62□□□□□ -0.39
COL7A1-205ENST00000465238 AKR1C3P42330 323 aa12.62□□□□□ -0.39
COL7A1-205ENST00000465238 Q6AWC8 147 aa12.62□□□□□ -0.39
COL7A1-205ENST00000465238 FMC1Q96HJ9 113 aa12.62□□□□□ -0.39
COL7A1-205ENST00000465238 IGHV4-4A0A075B6R2 117 aa12.61□□□□□ -0.39
COL7A1-205ENST00000465238 TRAV21A0A0B4J279 112 aa12.61□□□□□ -0.39
COL7A1-205ENST00000465238 SMUG1Q53HV7 270 aa12.61□□□□□ -0.39
COL7A1-205ENST00000465238 Q6ZQT7 251 aa12.61□□□□□ -0.39
COL7A1-205ENST00000465238 RNASE8Q8TDE3 154 aaKnown RBP12.61□□□□□ -0.39
COL7A1-205ENST00000465238 C8orf49Q96NF6 230 aa12.61□□□□□ -0.39
COL7A1-205ENST00000465238 TXNDC17Q9BRA2 123 aa12.61□□□□□ -0.39
COL7A1-205ENST00000465238 TIMM8BQ9Y5J9 83 aaPredicted RBP12.61□□□□□ -0.39
COL7A1-205ENST00000465238 LYRM9A8MSI8 78 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 SNURFLB1AK76 121 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 S100A9P06702 114 aaKnown RBP12.6□□□□□ -0.39
COL7A1-205ENST00000465238 C12orf74Q32Q52 190 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 ANXA2RQ3ZCQ2 193 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 MUC21Q5SSG8 566 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 FAM159AQ6UWV7 190 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 ZNF767PQ75MW2 155 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 Q86TA4 180 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 ZNF680Q8NEM1 530 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 KLF12Q9Y4X4 402 aa12.6□□□□□ -0.39
COL7A1-205ENST00000465238 SCO2A0A1W2PP80 73 aa12.59□□□□□ -0.39
COL7A1-205ENST00000465238 PLAC8L1A1L4L8 177 aa12.59□□□□□ -0.39
COL7A1-205ENST00000465238 GCGP01275 180 aa12.59□□□□□ -0.39
COL7A1-205ENST00000465238 TAGLN2P37802 199 aaKnown RBP12.59□□□□□ -0.39
COL7A1-205ENST00000465238 TMEM183BQ1AE95 376 aa12.59□□□□□ -0.39
COL7A1-205ENST00000465238 NOP10Q9NPE3 64 aaKnown RBP12.59□□□□□ -0.39
COL7A1-205ENST00000465238 NAGKQ9UJ70 344 aa12.59□□□□□ -0.39
COL7A1-205ENST00000465238 ZFP30Q9Y2G7 519 aa12.59□□□□□ -0.39
COL7A1-205ENST00000465238 DEFB131BA0A096LNP1 70 aa12.58□□□□□ -0.4
COL7A1-205ENST00000465238 TRBV6-1A0A0K0K1D8 114 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms