RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 J3KRW8 73 aa10.48□□□□□ -0.73
GPNMB-203ENST00000409458 PHOX2AO14813 284 aa10.48□□□□□ -0.73
GPNMB-203ENST00000409458 RAB5BP61020 215 aa10.48□□□□□ -0.73
GPNMB-203ENST00000409458 MRPL54Q6P161 138 aaKnown RBP10.48□□□□□ -0.73
GPNMB-203ENST00000409458 WNK1Q9H4A3 2382 aa10.48□□□□□ -0.73
GPNMB-203ENST00000409458 TMSB15BA0A087X1C1 80 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 FABP5P3A8MUU1 101 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 SAP30O75446 220 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 PF4P02776 101 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 ACTL10Q5JWF8 245 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 Q6ZQT7 251 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 SPAG8Q99932 426 aaPredicted RBP10.47□□□□□ -0.73
GPNMB-203ENST00000409458 CITED1Q99966 193 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 SAV1Q9H4B6 383 aaPredicted RBP10.47□□□□□ -0.73
GPNMB-203ENST00000409458 TRAV25A0A0B4J276 109 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 DEFB131AP59861 70 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 KIR3DS1Q14943 382 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 EBLN2Q6P2I7 272 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 FOXI2Q6ZQN5 318 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 LINC00482Q8N8I6 264 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 PGLYRP4Q96LB8 373 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 MAP6D1Q9H9H5 199 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 C11orf21Q9P2W6 132 aa10.47□□□□□ -0.73
GPNMB-203ENST00000409458 ZNF256Q9Y2P7 627 aaPredicted RBP10.47□□□□□ -0.73
GPNMB-203ENST00000409458 TRBV7-9A0A0J9YWB2 115 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 FAM231BA6NCW3 169 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 OR4C46A6NHA9 309 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 CRISP2P16562 243 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 LINC01559Q495D7 138 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 ZNF575Q86XF7 245 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 APRG1Q8IVJ8 170 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 FRZBQ92765 325 aa10.46□□□□□ -0.74
GPNMB-203ENST00000409458 NIPBLQ6KC79 2804 aaeCLIP10.45□□□□□ -0.74
GPNMB-203ENST00000409458 KNCNA6PVL3 124 aa10.45□□□□□ -0.74
GPNMB-203ENST00000409458 ORM1P02763 201 aa10.45□□□□□ -0.74
GPNMB-203ENST00000409458 ZNF124Q15973 351 aa10.45□□□□□ -0.74
GPNMB-203ENST00000409458 KRTAP24-1Q3LI83 254 aa10.45□□□□□ -0.74
GPNMB-203ENST00000409458 IGKV3D-20A0A0C4DH25 116 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 A0A1B0GXF2 115 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 SNURFLB1AK76 121 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 IGKV3-20P01619 116 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 IGLV1-51P01701 117 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 FOXA3P55318 350 aaPredicted RBP10.44□□□□□ -0.74
GPNMB-203ENST00000409458 RPS20P60866 119 aaKnown RBP10.44□□□□□ -0.74
GPNMB-203ENST00000409458 FABP9Q0Z7S8 132 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 TMEM136Q6ZRR5 245 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 ODF3Q96PU9 254 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 TRAPPC1Q9Y5R8 145 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 XKRY2A2RUG3 117 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 KLLNB2CW77 178 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 DUSP14O95147 198 aaKnown RBP10.44□□□□□ -0.74
GPNMB-203ENST00000409458 GPX1P07203 203 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 TRGC1P0CF51 173 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 RNASE4P34096 147 aaKnown RBP10.44□□□□□ -0.74
GPNMB-203ENST00000409458 ATP5L2Q7Z4Y8 100 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 TPPP3Q9BW30 176 aa10.44□□□□□ -0.74
GPNMB-203ENST00000409458 AGRNO00468 2067 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 TRAV21A0A0B4J279 112 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 GRIFINA4D1Z8 144 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BKO60814 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BJP06899 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HLA-DRB4P13762 266 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BOP23527 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BBP33778 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BDP58876 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BCP62807 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST2H2BEQ16778 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 ODF3L2Q3SX64 289 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.43□□□□□ -0.74
GPNMB-203ENST00000409458 Q6AWC8 147 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 WDR73Q6P4I2 378 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 SPATA3Q8NHX4 192 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BHQ93079 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BNQ99877 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HIST1H2BMQ99879 126 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 GNB1LQ9BYB4 327 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 MRPL18Q9H0U6 180 aaKnown RBP10.43□□□□□ -0.74
GPNMB-203ENST00000409458 HLA-DRB4X5D2U9 266 aa10.43□□□□□ -0.74
GPNMB-203ENST00000409458 ARMS2P0C7Q2 107 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 LEPP41159 167 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 HBBP68871 147 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 RASL11AQ6T310 242 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 AMTNQ6UX39 209 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 PRIMA1Q86XR5 153 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 NAGKQ9UJ70 344 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 JMJD1CQ15652 2540 aa10.42□□□□□ -0.74
GPNMB-203ENST00000409458 TEP1Q99973 2627 aaKnown RBP10.42□□□□□ -0.74
GPNMB-203ENST00000409458 LOC105371267A0A1B0GV96 52 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 RBMY1BA6NDE4 496 aaKnown RBP10.41□□□□□ -0.74
GPNMB-203ENST00000409458 RBMY1EA6NEQ0 496 aaKnown RBP10.41□□□□□ -0.74
GPNMB-203ENST00000409458 M0R2Z0 102 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 RBMY1DP0C7P1 496 aaKnown RBP10.41□□□□□ -0.74
GPNMB-203ENST00000409458 IGLC6P0CF74 106 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 CAMPP49913 170 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 RAB4BP61018 213 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 COX19Q49B96 90 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 LYZL1Q6UWQ5 148 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 FER1L6-AS1Q8NA97 138 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 OR2K2Q8NGT1 345 aa10.41□□□□□ -0.74
GPNMB-203ENST00000409458 TENM1Q9UKZ4 2725 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms