RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 GAGE7O76087 117 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 GAGE12FP0CL80 117 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 GAGE12GP0CL81 117 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 GAGE12IP0CL82 117 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 AKR1C8PQ5T2L2 129 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 C11orf72Q8NBR9 251 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 OR11H4Q8NGC9 324 aa16.67■□□□□ 0.26
SHMT1-204ENST00000395682 HMSDA8MTL9 139 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 ZNF726P1Q15940 193 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 IQCF2Q8IXL9 164 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 KCNRGQ8N5I3 272 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 POM121L12Q8N7R1 296 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 ARPC5LQ9BPX5 153 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 TP53TG3Q9ULZ0 132 aa16.66■□□□□ 0.26
SHMT1-204ENST00000395682 CTXND1A0A1B0GTU2 59 aa16.65■□□□□ 0.26
SHMT1-204ENST00000395682 ZNF345Q14585 488 aa16.65■□□□□ 0.26
SHMT1-204ENST00000395682 TRAV8-1A0A0A6YYK1 113 aa16.64■□□□□ 0.25
SHMT1-204ENST00000395682 SUMO1P63165 101 aaKnown RBP16.64■□□□□ 0.25
SHMT1-204ENST00000395682 Q6ZTI0 123 aa16.64■□□□□ 0.25
SHMT1-204ENST00000395682 C15orf53Q8NAA6 179 aa16.64■□□□□ 0.25
SHMT1-204ENST00000395682 C5orf17Q8NAS9 161 aa16.64■□□□□ 0.25
SHMT1-204ENST00000395682 KLF12Q9Y4X4 402 aa16.64■□□□□ 0.25
SHMT1-204ENST00000395682 MUC21Q5SSG8 566 aa16.63■□□□□ 0.25
SHMT1-204ENST00000395682 Q6AWC8 147 aa16.63■□□□□ 0.25
SHMT1-204ENST00000395682 A0A0D9SG52 128 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 TCRAP04437 139 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 TCL1AP56279 114 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 OR5I1Q13606 314 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 TVP23CQ96ET8 276 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 SGK494Q96LW2 274 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 TMPRSS5Q9H3S3 457 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 TREM1Q9NP99 234 aa16.62■□□□□ 0.25
SHMT1-204ENST00000395682 SERTM2A0A1B0GWG4 89 aa16.61■□□□□ 0.25
SHMT1-204ENST00000395682 A0A1W2PRE2 83 aa16.61■□□□□ 0.25
SHMT1-204ENST00000395682 GGTLC3B5MD39 225 aa16.61■□□□□ 0.25
SHMT1-204ENST00000395682 IBA57Q5T440 356 aaKnown RBP16.61■□□□□ 0.25
SHMT1-204ENST00000395682 UBE2DNLQ8IWF7 75 aa16.61■□□□□ 0.25
SHMT1-204ENST00000395682 EPDR1Q9UM22 224 aa16.61■□□□□ 0.25
SHMT1-204ENST00000395682 TRGV1A0A0A0MS02 117 aa16.6■□□□□ 0.25
SHMT1-204ENST00000395682 K7EQM0 130 aa16.6■□□□□ 0.25
SHMT1-204ENST00000395682 NUDT3O95989 172 aa16.6■□□□□ 0.25
SHMT1-204ENST00000395682 FGF8P55075 233 aaPredicted RBP16.6■□□□□ 0.25
SHMT1-204ENST00000395682 TRGV2A0A075B6R0 118 aa16.59■□□□□ 0.25
SHMT1-204ENST00000395682 SPINK4O60575 86 aa16.59■□□□□ 0.25
SHMT1-204ENST00000395682 RNF212Q495C1 297 aa16.59■□□□□ 0.25
SHMT1-204ENST00000395682 FAM159AQ6UWV7 190 aa16.59■□□□□ 0.25
SHMT1-204ENST00000395682 KANTRA0A1W2PQU2 76 aa16.58■□□□□ 0.24
SHMT1-204ENST00000395682 F6UZH7 168 aa16.58■□□□□ 0.24
SHMT1-204ENST00000395682 HOXA5P20719 270 aa16.58■□□□□ 0.24
SHMT1-204ENST00000395682 NDFIP1Q9BT67 221 aa16.58■□□□□ 0.24
SHMT1-204ENST00000395682 ZNF471Q9BX82 626 aaPredicted RBP16.58■□□□□ 0.24
SHMT1-204ENST00000395682 MDFICQ9P1T7 246 aa16.58■□□□□ 0.24
SHMT1-204ENST00000395682 PSG8Q9UQ74 426 aa16.58■□□□□ 0.24
SHMT1-204ENST00000395682 TRAV26-1A0A087WT03 109 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 TRAV21A0A0B4J279 112 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 MAP1LC3B2A6NCE7 125 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 BCL2L11O43521 198 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 UBE2G2P60604 165 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 ZNF415Q09FC8 603 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 TMEM183BQ1AE95 376 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 TMEM183AQ8IXX5 376 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 MAP1LC3BQ9GZQ8 125 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 NAGKQ9UJ70 344 aa16.57■□□□□ 0.24
SHMT1-204ENST00000395682 IFNA7P01567 189 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 IGLV2-11P01706 119 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 SEC11BP0C7V7 166 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 FHITP49789 147 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 LGALS9BQ3B8N2 356 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 CYB561D1Q8N8Q1 229 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 C18orf15Q96N68 181 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 DNAH6Q9C0G6 4158 aa16.56■□□□□ 0.24
SHMT1-204ENST00000395682 EPPK1P58107 5090 aaKnown RBP16.55■□□□□ 0.24
SHMT1-204ENST00000395682 A0A0J9YY99 117 aa16.55■□□□□ 0.24
SHMT1-204ENST00000395682 FLI1Q01543 452 aaPredicted RBP16.55■□□□□ 0.24
SHMT1-204ENST00000395682 TMUB2Q71RG4 321 aa16.55■□□□□ 0.24
SHMT1-204ENST00000395682 PRNTQ86SH4 94 aa16.55■□□□□ 0.24
SHMT1-204ENST00000395682 ATG101Q9BSB4 218 aa16.55■□□□□ 0.24
SHMT1-204ENST00000395682 MRPL16Q9NX20 251 aaKnown RBP16.55■□□□□ 0.24
SHMT1-204ENST00000395682 TRGV11A0A075B6L2 103 aa16.54■□□□□ 0.24
SHMT1-204ENST00000395682 PFDN1O60925 122 aa16.54■□□□□ 0.24
SHMT1-204ENST00000395682 TDRG1Q3Y452 100 aa16.54■□□□□ 0.24
SHMT1-204ENST00000395682 Q6ZNX1 250 aa16.54■□□□□ 0.24
SHMT1-204ENST00000395682 STOML3Q8TAV4 291 aa16.54■□□□□ 0.24
SHMT1-204ENST00000395682 C8orf49Q96NF6 230 aa16.54■□□□□ 0.24
SHMT1-204ENST00000395682 NKX6-2Q9C056 277 aaPredicted RBP16.54■□□□□ 0.24
SHMT1-204ENST00000395682 FBLL1A6NHQ2 334 aaKnown RBP16.53■□□□□ 0.24
SHMT1-204ENST00000395682 FAM74A7A6NL05 159 aa16.53■□□□□ 0.24
SHMT1-204ENST00000395682 GNRH2O43555 120 aa16.53■□□□□ 0.24
SHMT1-204ENST00000395682 TMEM75Q8N9X5 138 aa16.53■□□□□ 0.24
SHMT1-204ENST00000395682 LINC00479Q96M42 142 aa16.53■□□□□ 0.24
SHMT1-204ENST00000395682 UMAD1C9J7I0 102 aa16.52■□□□□ 0.24
SHMT1-204ENST00000395682 M0R2N4 97 aa16.52■□□□□ 0.24
SHMT1-204ENST00000395682 EIF5AP63241 154 aaKnown RBP16.52■□□□□ 0.24
SHMT1-204ENST00000395682 DNAH10Q8IVF4 4471 aa16.51■□□□□ 0.23
SHMT1-204ENST00000395682 TRAV34A0A0B4J273 112 aa16.51■□□□□ 0.23
SHMT1-204ENST00000395682 ZNF80P51504 273 aaPredicted RBP16.51■□□□□ 0.23
SHMT1-204ENST00000395682 SAPCD1Q5SSQ6 148 aa16.51■□□□□ 0.23
SHMT1-204ENST00000395682 FAM213BQ8TBF2 198 aa16.51■□□□□ 0.23
SHMT1-204ENST00000395682 SPXQ9BT56 116 aa16.51■□□□□ 0.23
SHMT1-204ENST00000395682 IGLV2-18A0A075B6J9 118 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms