RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 ALMS1Q8TCU4 4167 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 TRAV8-1A0A0A6YYK1 113 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 RGS13O14921 159 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 FHITP49789 147 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 UBE2G2P60604 165 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 EIF4E3Q8N5X7 224 aaKnown RBP12.07□□□□□ -0.48
CLN3-203ENST00000357806 FAM213BQ8TBF2 198 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 LINC00476Q8WZB0 136 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 NKX6-2Q9C056 277 aaPredicted RBP12.07□□□□□ -0.48
CLN3-203ENST00000357806 PLA2G2EQ9NZK7 142 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 EPDR1Q9UM22 224 aa12.07□□□□□ -0.48
CLN3-203ENST00000357806 SACSQ9NZJ4 4579 aa12.06□□□□□ -0.48
CLN3-203ENST00000357806 IGHV4-4A0A075B6R2 117 aa12.06□□□□□ -0.48
CLN3-203ENST00000357806 CBY3A6NI87 242 aa12.06□□□□□ -0.48
CLN3-203ENST00000357806 EIF5AL1Q6IS14 154 aaKnown RBP12.06□□□□□ -0.48
CLN3-203ENST00000357806 CYB561D1Q8N8Q1 229 aa12.06□□□□□ -0.48
CLN3-203ENST00000357806 ATG101Q9BSB4 218 aa12.06□□□□□ -0.48
CLN3-203ENST00000357806 NDFIP1Q9BT67 221 aa12.06□□□□□ -0.48
CLN3-203ENST00000357806 NOP10Q9NPE3 64 aaKnown RBP12.06□□□□□ -0.48
CLN3-203ENST00000357806 FAM74A7A6NL05 159 aa12.05□□□□□ -0.48
CLN3-203ENST00000357806 DEFB130BP0DP73 79 aa12.05□□□□□ -0.48
CLN3-203ENST00000357806 DEFB130AP0DP74 79 aa12.05□□□□□ -0.48
CLN3-203ENST00000357806 ANXA2RQ3ZCQ2 193 aa12.05□□□□□ -0.48
CLN3-203ENST00000357806 Q6AWC8 147 aa12.05□□□□□ -0.48
CLN3-203ENST00000357806 IGHV1OR15-1A0A075B7D0 117 aa12.04□□□□□ -0.48
CLN3-203ENST00000357806 FBLL1A6NHQ2 334 aaKnown RBP12.04□□□□□ -0.48
CLN3-203ENST00000357806 HTN3P15516 51 aa12.04□□□□□ -0.48
CLN3-203ENST00000357806 TMEM75Q8N9X5 138 aa12.04□□□□□ -0.48
CLN3-203ENST00000357806 TREM1Q9NP99 234 aa12.04□□□□□ -0.48
CLN3-203ENST00000357806 LY6G6CO95867 125 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 IFNA7P01567 189 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 ZFP69Q49AA0 526 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 IBA57Q5T440 356 aaKnown RBP12.03□□□□□ -0.48
CLN3-203ENST00000357806 Q6ZQT7 251 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 SFT2D1Q8WV19 159 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 MBD3L1Q8WWY6 194 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 SGK494Q96LW2 274 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 APLNQ9ULZ1 77 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 ARL2-SNX15V9GYD0 113 aa12.03□□□□□ -0.48
CLN3-203ENST00000357806 F6UZH7 168 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 FLI1Q01543 452 aaPredicted RBP12.02□□□□□ -0.48
CLN3-203ENST00000357806 DAZ2Q13117 558 aaKnown RBP12.02□□□□□ -0.48
CLN3-203ENST00000357806 SLC51BQ86UW2 128 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 C11orf72Q8NBR9 251 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 TVP23CQ96ET8 276 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 FAM210BQ96KR6 192 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 NDUFAF3Q9BU61 184 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 PSG8Q9UQ74 426 aa12.02□□□□□ -0.48
CLN3-203ENST00000357806 RYR3Q15413 4870 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 A0A1B0GVG6 124 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 PEX7O00628 323 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 H2AFB1P0C5Y9 115 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 PPT1P50897 306 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 RAB5CP51148 216 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 FAM159AQ6UWV7 190 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 HIST1H2BAQ96A08 127 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 GSN-AS1Q9NRJ2 163 aa12.02□□□□□ -0.49
CLN3-203ENST00000357806 TRAV21A0A0B4J279 112 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 IGLV2-11P01706 119 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 ATP5G1P05496 136 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 ATP5G3P48201 142 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 TCL1AP56279 114 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 ZNF415Q09FC8 603 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 MUC21Q5SSG8 566 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 CST9LP1Q5W188 147 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 LGALS9CQ6DKI2 356 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 PRNTQ86SH4 94 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 C9orf62Q8N4C0 152 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 LINC00612Q8N6U2 182 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 TCEAL7Q9BRU2 100 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 TP53TG3Q9ULZ0 132 aa12.01□□□□□ -0.49
CLN3-203ENST00000357806 DNAH1Q9P2D7 4330 aa12□□□□□ -0.49
CLN3-203ENST00000357806 A0A1B0GV50 99 aa12□□□□□ -0.49
CLN3-203ENST00000357806 NAGKQ9UJ70 344 aa12□□□□□ -0.49
CLN3-203ENST00000357806 GAGE12BA1L429 117 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 GAGE7O76087 117 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 GAGE12FP0CL80 117 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 GAGE12GP0CL81 117 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 GAGE12IP0CL82 117 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 SULT1A2P50226 295 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 SAPCD1Q5SSQ6 148 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 C8orf49Q96NF6 230 aa11.99□□□□□ -0.49
CLN3-203ENST00000357806 TRGV11A0A075B6L2 103 aa11.98□□□□□ -0.49
CLN3-203ENST00000357806 PAGE4O60829 102 aa11.98□□□□□ -0.49
CLN3-203ENST00000357806 TDRG1Q3Y452 100 aa11.98□□□□□ -0.49
CLN3-203ENST00000357806 SMUG1Q53HV7 270 aa11.98□□□□□ -0.49
CLN3-203ENST00000357806 LINC00479Q96M42 142 aa11.98□□□□□ -0.49
CLN3-203ENST00000357806 KLF12Q9Y4X4 402 aa11.98□□□□□ -0.49
CLN3-203ENST00000357806 TRAV34A0A0B4J273 112 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 F5H768 121 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 TEX46H3BTG2 121 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 GCGP01275 180 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 TMEM88Q6PEY1 159 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 Q6ZTI0 123 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 Q86TA4 180 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 RYR2Q92736 4967 aa11.97□□□□□ -0.49
CLN3-203ENST00000357806 TRGV1A0A0A0MS02 117 aa11.96□□□□□ -0.49
CLN3-203ENST00000357806 SPINK4O60575 86 aa11.96□□□□□ -0.49
CLN3-203ENST00000357806 UBE2G1P62253 170 aa11.96□□□□□ -0.49
CLN3-203ENST00000357806 TMEM183BQ1AE95 376 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms