RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 GAGE7O76087 117 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 GAGE12FP0CL80 117 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 GAGE12GP0CL81 117 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 GAGE12IP0CL82 117 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 GAGE4Q13068 117 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 IGLC1P0CG04 106 aa15.57■□□□□ 0.08
CCDC88B-202ENST00000356786 LTAP01374 205 aa15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 C11orf44Q8N8P7 122 aa15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 MED13Q9UHV7 2174 aa15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 HELZP42694 1942 aaKnown RBP15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 C3orf36Q3SXR2 165 aa15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 B5MCH6 92 aa15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 H3BRN7 92 aa15.56■□□□□ 0.08
CCDC88B-202ENST00000356786 A0A087WX48 190 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 ANKRD39Q53RE8 183 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 NTN5Q8WTR8 489 aaPredicted RBP15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 KNCNA6PVL3 124 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 POU2AF1Q16633 256 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 THAP8Q8NA92 274 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 USMG5Q96IX5 58 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 A0A0G2JNJ9 132 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 Q9UFV3 132 aa15.55■□□□□ 0.08
CCDC88B-202ENST00000356786 WNK1Q9H4A3 2382 aa15.54■□□□□ 0.08
CCDC88B-202ENST00000356786 K7EM74 188 aa15.54■□□□□ 0.08
CCDC88B-202ENST00000356786 SSC4DQ8WTU2 575 aa15.54■□□□□ 0.08
CCDC88B-202ENST00000356786 DAZ1Q9NQZ3 744 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-202ENST00000356786 GATA4P43694 442 aa15.54■□□□□ 0.08
CCDC88B-202ENST00000356786 TRBV25-1A0A075B6N4 114 aa15.53■□□□□ 0.08
CCDC88B-202ENST00000356786 NDUFA12Q9UI09 145 aa15.53■□□□□ 0.08
CCDC88B-202ENST00000356786 J3QQQ9 107 aa15.53■□□□□ 0.08
CCDC88B-202ENST00000356786 HLA-DMBP28068 263 aa15.53■□□□□ 0.08
CCDC88B-202ENST00000356786 ANXA2RQ3ZCQ2 193 aa15.53■□□□□ 0.08
CCDC88B-202ENST00000356786 C17orf77Q96MU5 243 aa15.52■□□□□ 0.08
CCDC88B-202ENST00000356786 FAM223BA6NKX1 122 aa15.52■□□□□ 0.07
CCDC88B-202ENST00000356786 DIAPH2-AS1Q14236 149 aa15.52■□□□□ 0.07
CCDC88B-202ENST00000356786 FAM223AQ8IWN6 122 aa15.52■□□□□ 0.07
CCDC88B-202ENST00000356786 ATP6V0E1O15342 81 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 SAA4P35542 130 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 C8orf86Q6ZUL3 223 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 C15orf53Q8NAA6 179 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 SOCS3O14543 225 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 ZGRF1Q86YA3 2104 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 CARD19Q96LW7 228 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 GAGE5Q13069 117 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 GAGE6Q13070 117 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 LINC01545Q5VT33 79 aa15.51■□□□□ 0.07
CCDC88B-202ENST00000356786 VWC2LB2RUY7 222 aa15.5■□□□□ 0.07
CCDC88B-202ENST00000356786 LOXP28300 417 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-202ENST00000356786 TAX1BP3O14907 124 aa15.5■□□□□ 0.07
CCDC88B-202ENST00000356786 FAM110DQ8TAY7 271 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-202ENST00000356786 UBE2E2Q96LR5 201 aa15.5■□□□□ 0.07
CCDC88B-202ENST00000356786 E7EQL1 145 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 G3V318 75 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 PIP4P2Q8N4L2 257 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 IGLL5B9A064 214 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 TEX36Q5VZQ5 186 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 PRSS29PA6NIE9 313 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 I3L3M4 83 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 LINC00311Q8N616 119 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 ZNF491Q8N8L2 437 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 Q8TCH9 128 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 SS18L2Q9UHA2 77 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 ARHGAP21Q5T5U3 1957 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 LY6G6EA0A0G2JKS1 128 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 SCRT2Q9NQ03 307 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 U3KQA8 63 aa15.49■□□□□ 0.07
CCDC88B-202ENST00000356786 FRMD6-AS1P0C7T7 363 aa15.48■□□□□ 0.07
CCDC88B-202ENST00000356786 EGR2P11161 476 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-202ENST00000356786 SPINK13Q1W4C9 94 aa15.48■□□□□ 0.07
CCDC88B-202ENST00000356786 EML6Q6ZMW3 1958 aa15.48■□□□□ 0.07
CCDC88B-202ENST00000356786 MSRB2Q9Y3D2 182 aa15.48■□□□□ 0.07
CCDC88B-202ENST00000356786 NUP210Q8TEM1 1887 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-202ENST00000356786 FGF23Q9GZV9 251 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-202ENST00000356786 WFDC2Q14508 124 aa15.47■□□□□ 0.07
CCDC88B-202ENST00000356786 GATA1P15976 413 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-202ENST00000356786 UTF1Q5T230 341 aa15.47■□□□□ 0.07
CCDC88B-202ENST00000356786 C20orf78Q9BR46 151 aa15.47■□□□□ 0.07
CCDC88B-202ENST00000356786 CFC1BP0CG36 223 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 CFC1P0CG37 223 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 KLK9Q9UKQ9 250 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 SPG11Q96JI7 2443 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 IGLV3-9A0A075B6K5 115 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 INSP01308 110 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 DEFB131AP59861 70 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 FOXI2Q6ZQN5 318 aa15.46■□□□□ 0.07
CCDC88B-202ENST00000356786 FREM1Q5H8C1 2179 aa15.46■□□□□ 0.06
CCDC88B-202ENST00000356786 SYNJ2BPP57105 145 aa15.45■□□□□ 0.06
CCDC88B-202ENST00000356786 TTTY13Q9BZ97 58 aa15.45■□□□□ 0.06
CCDC88B-202ENST00000356786 FXYD2P54710 66 aa15.45■□□□□ 0.06
CCDC88B-202ENST00000356786 Q6ZS92 163 aa15.45■□□□□ 0.06
CCDC88B-202ENST00000356786 RHODO00212 210 aa15.44■□□□□ 0.06
CCDC88B-202ENST00000356786 INS-IGF2F8WCM5 200 aa15.44■□□□□ 0.06
CCDC88B-202ENST00000356786 PFN2P35080 140 aa15.44■□□□□ 0.06
CCDC88B-202ENST00000356786 ANKRD29Q8N6D5 301 aa15.44■□□□□ 0.06
CCDC88B-202ENST00000356786 K7EMI3 77 aa15.43■□□□□ 0.06
CCDC88B-202ENST00000356786 IGHV3-16A0A0C4DH30 117 aa15.43■□□□□ 0.06
CCDC88B-202ENST00000356786 PTPRQQ9UMZ3 2332 aa15.43■□□□□ 0.06
CCDC88B-202ENST00000356786 CRYBA4P53673 196 aa15.42■□□□□ 0.06
CCDC88B-202ENST00000356786 SPANXDQ9BXN6 97 aa15.42■□□□□ 0.06
CCDC88B-202ENST00000356786 BPESC1Q9GZL8 116 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms