RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 EXOC3-AS1Q8N2X6 119 aa13.08□□□□□ -0.32
PHGDH-234ENST00000642041 C4orf3Q8WVX3 66 aa13.08□□□□□ -0.32
PHGDH-234ENST00000642041 DPF1Q92782 380 aa13.08□□□□□ -0.32
PHGDH-234ENST00000642041 ZNF705GA8MUZ8 300 aaPredicted RBP13.07□□□□□ -0.32
PHGDH-234ENST00000642041 K7EN84 100 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 OVOL1O14753 267 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 MT-ND6P03923 174 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 S100A6P06703 90 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 Q6AWC8 147 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 WDR73Q6P4I2 378 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 Q86TA4 180 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 C11orf44Q8N8P7 122 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 B9D2Q9BPU9 175 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 NRN1Q9NPD7 142 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 SMAD5-AS1Q9Y6J3 95 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 URGCP-MRPS24S4R325 110 aa13.07□□□□□ -0.32
PHGDH-234ENST00000642041 IGHV3-35A0A0C4DH35 117 aa13.06□□□□□ -0.32
PHGDH-234ENST00000642041 P01737 135 aa13.06□□□□□ -0.32
PHGDH-234ENST00000642041 RPLP1P05386 114 aaKnown RBP13.06□□□□□ -0.32
PHGDH-234ENST00000642041 RPS20P60866 119 aaKnown RBP13.06□□□□□ -0.32
PHGDH-234ENST00000642041 PAFAH1B2P68402 229 aa13.06□□□□□ -0.32
PHGDH-234ENST00000642041 C16orf92Q96LL3 132 aa13.06□□□□□ -0.32
PHGDH-234ENST00000642041 RHPN1-AS1Q9BWJ2 59 aa13.06□□□□□ -0.32
PHGDH-234ENST00000642041 V9GYV3 84 aa13.06□□□□□ -0.32
PHGDH-234ENST00000642041 A0A1W2PPQ1 181 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 LINC01619G3V211 115 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 GNG5P63218 68 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 ATP5L2Q7Z4Y8 100 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 PRNTQ86SH4 94 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 GBGT1Q8N5D6 347 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 TSKUQ8WUA8 353 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 LINC00477Q96M19 166 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 NAT8BQ9UHF3 227 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 RPH3ALQ9UNE2 315 aa13.05□□□□□ -0.32
PHGDH-234ENST00000642041 TRAV2A0A0B4J234 112 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 TRAV34A0A0B4J273 112 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 SMIM27A0A1W2PRY6 76 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 CHEK1O14757 476 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 S100A8P05109 93 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 TMEM78Q5T7P6 136 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 C8orf86Q6ZUL3 223 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 C17orf77Q96MU5 243 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 STAB2Q8WWQ8 2551 aa13.04□□□□□ -0.32
PHGDH-234ENST00000642041 A0A1B0GW15 77 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 PGPEP1LA6NFU8 196 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 SLC17A3O00476 420 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 IGLV2-11P01706 119 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 SMUG1Q53HV7 270 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 C9orf47Q6ZRZ4 202 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 NUDT10Q8NFP7 164 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 NUDT11Q96G61 164 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 LINC00479Q96M42 142 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 ASCL2Q99929 193 aa13.03□□□□□ -0.32
PHGDH-234ENST00000642041 RPP21Q9H633 154 aaKnown RBP13.03□□□□□ -0.32
PHGDH-234ENST00000642041 TGIF2-C20orf24A0A0A6YYL0 155 aa13.02□□□□□ -0.33
PHGDH-234ENST00000642041 C19orf71A6NCJ1 209 aa13.02□□□□□ -0.33
PHGDH-234ENST00000642041 IZUMO1RA6ND01 250 aa13.02□□□□□ -0.33
PHGDH-234ENST00000642041 NPIPB6E9PJ23 425 aa13.02□□□□□ -0.33
PHGDH-234ENST00000642041 KLF5Q13887 457 aaPredicted RBP13.02□□□□□ -0.33
PHGDH-234ENST00000642041 NSUN5P1Q3KNT7 163 aa13.02□□□□□ -0.33
PHGDH-234ENST00000642041 UNQ9165/PRO28630Q6UXU0 137 aa13.02□□□□□ -0.33
PHGDH-234ENST00000642041 LYSTQ99698 3801 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 DNAH7Q8WXX0 4024 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 H3BTX0 84 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 TRBV12-3P01733 135 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 CXCL1P09341 107 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 FOXA3P55318 350 aaPredicted RBP13.01□□□□□ -0.33
PHGDH-234ENST00000642041 SNRPD3P62318 126 aaKnown RBP13.01□□□□□ -0.33
PHGDH-234ENST00000642041 OR5I1Q13606 314 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 FAM162BQ5T6X4 162 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 WFDC9Q8NEX5 89 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 OR10J6PQ8NGY7 276 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 PRR25Q96S07 402 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 GNB1LQ9BYB4 327 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 TSSC4Q9Y5U2 329 aaPredicted RBP13.01□□□□□ -0.33
PHGDH-234ENST00000642041 U3KQK5 164 aa13.01□□□□□ -0.33
PHGDH-234ENST00000642041 FABP5P3A8MUU1 101 aa13□□□□□ -0.33
PHGDH-234ENST00000642041 IGLL1P15814 213 aa13□□□□□ -0.33
PHGDH-234ENST00000642041 RPL11P62913 178 aaKnown RBP13□□□□□ -0.33
PHGDH-234ENST00000642041 OR1N2Q8NGR9 330 aa13□□□□□ -0.33
PHGDH-234ENST00000642041 WIPF2Q8TF74 440 aaPredicted RBP13□□□□□ -0.33
PHGDH-234ENST00000642041 BORCS7Q96B45 105 aa13□□□□□ -0.33
PHGDH-234ENST00000642041 RNASE7Q9H1E1 156 aaKnown RBP13□□□□□ -0.33
PHGDH-234ENST00000642041 M0R3E3 92 aa12.99□□□□□ -0.33
PHGDH-234ENST00000642041 HLA-DQA1P01909 254 aa12.99□□□□□ -0.33
PHGDH-234ENST00000642041 APOHP02749 345 aaPredicted RBP12.99□□□□□ -0.33
PHGDH-234ENST00000642041 SNRPCP09234 159 aaKnown RBP12.99□□□□□ -0.33
PHGDH-234ENST00000642041 HOXD3P31249 432 aaPredicted RBP12.99□□□□□ -0.33
PHGDH-234ENST00000642041 ZNF138P52744 262 aa12.99□□□□□ -0.33
PHGDH-234ENST00000642041 C10orf99Q6UWK7 81 aa12.99□□□□□ -0.33
PHGDH-234ENST00000642041 TCF24Q7RTU0 167 aa12.99□□□□□ -0.33
PHGDH-234ENST00000642041 HYDINQ4G0P3 5121 aa12.98□□□□□ -0.33
PHGDH-234ENST00000642041 ZNF207O43670 478 aaKnown RBP12.98□□□□□ -0.33
PHGDH-234ENST00000642041 NHLRC4P0CG21 123 aaPredicted RBP12.98□□□□□ -0.33
PHGDH-234ENST00000642041 CD33P20138 364 aa12.98□□□□□ -0.33
PHGDH-234ENST00000642041 CMC4P56277 68 aaPredicted RBP12.98□□□□□ -0.33
PHGDH-234ENST00000642041 HIST1H1AQ02539 215 aaPredicted RBP12.98□□□□□ -0.33
PHGDH-234ENST00000642041 TM4SF20Q53R12 229 aa12.98□□□□□ -0.33
PHGDH-234ENST00000642041 CASC10Q5T4H9 136 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms