RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FAM222AQ5U5X8 452 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 ZNF767PQ75MW2 155 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 OR11H4Q8NGC9 324 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 RXFP4Q8TDU9 374 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 C2CD4CQ8TF44 421 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 OTORQ9NRC9 128 aa12.06□□□□□ -0.48
TRIM28-215ENST00000601150 DYNC2H1Q8NCM8 4307 aaKnown RBP12.05□□□□□ -0.48
TRIM28-215ENST00000601150 RBAKDNA6NC62 111 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 J3KRW8 73 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 PRM2P04554 102 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 SLC25A5P05141 298 aaKnown RBP12.05□□□□□ -0.48
TRIM28-215ENST00000601150 FAM74A1Q5RGS3 127 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 FAM19A4Q96LR4 140 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 VGLL1Q99990 258 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 ARPC5LQ9BPX5 153 aa12.05□□□□□ -0.48
TRIM28-215ENST00000601150 TRAV12-3A0A0B4J271 114 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 A0A0D9SG52 128 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 PGPA6NDG6 321 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 HTN1P15515 57 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 CRISP2P16562 243 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 AZU1P20160 251 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 GCHFRP30047 84 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 Q6ZNX1 250 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 CMTM2Q8TAZ6 248 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 HYLS1Q96M11 299 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 NIPSNAP3BQ9BS92 247 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 ZNF492Q9P255 531 aa12.04□□□□□ -0.48
TRIM28-215ENST00000601150 C7orf71A4D174 169 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 KLLNB2CW77 178 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 DIRC3C9JPN6 131 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 CXorf1O96002 111 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 NMBP08949 121 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 ZNF138P52744 262 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 AKR1C8PQ5T2L2 129 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 SUN5Q8TC36 379 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 C16orf74Q96GX8 76 aa12.03□□□□□ -0.48
TRIM28-215ENST00000601150 DEFB131BA0A096LNP1 70 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 LYRM9A8MSI8 78 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 GPX1P07203 203 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 TCTAP57738 103 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 ZNF493Q6ZR52 646 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 SSX7Q7RTT5 188 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 CCDC28AQ8IWP9 274 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 ARL6IP6Q8N6S5 226 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 ST6GAL2Q96JF0 529 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 TMEM167BQ9NRX6 74 aa12.02□□□□□ -0.49
TRIM28-215ENST00000601150 TRBV7-9A0A0J9YWB2 115 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 CTXND1A0A1B0GTU2 59 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 KANTRA0A1W2PQU2 76 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 PLAC8L1A1L4L8 177 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 IGLL5B9A064 214 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 RNASE4P34096 147 aaKnown RBP12.01□□□□□ -0.49
TRIM28-215ENST00000601150 CD300CQ08708 224 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 BTN1A1Q13410 526 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 ZNF726P1Q15940 193 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 ZFAND2AQ8N6M9 145 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 Q8TAT8 98 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 TMEM263Q8WUH6 116 aaKnown RBP12.01□□□□□ -0.49
TRIM28-215ENST00000601150 PYGO2Q9BRQ0 406 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 RPH3ALQ9UNE2 315 aa12.01□□□□□ -0.49
TRIM28-215ENST00000601150 BCL2L11O43521 198 aa12□□□□□ -0.49
TRIM28-215ENST00000601150 DAD1P61803 113 aa12□□□□□ -0.49
TRIM28-215ENST00000601150 IQCF2Q8IXL9 164 aa12□□□□□ -0.49
TRIM28-215ENST00000601150 RNASE8Q8TDE3 154 aaKnown RBP12□□□□□ -0.49
TRIM28-215ENST00000601150 LINC00476Q8WZB0 136 aa12□□□□□ -0.49
TRIM28-215ENST00000601150 PLA2G2EQ9NZK7 142 aa12□□□□□ -0.49
TRIM28-215ENST00000601150 LENEPQ9Y5L5 61 aa12□□□□□ -0.49
TRIM28-215ENST00000601150 ZNF324O75467 553 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-215ENST00000601150 GOLT1AQ6ZVE7 132 aa11.99□□□□□ -0.49
TRIM28-215ENST00000601150 TCTE3Q8IZS6 198 aa11.99□□□□□ -0.49
TRIM28-215ENST00000601150 TMED6Q8WW62 240 aa11.99□□□□□ -0.49
TRIM28-215ENST00000601150 ZNF471Q9BX82 626 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-215ENST00000601150 TIMM8BQ9Y5J9 83 aaPredicted RBP11.99□□□□□ -0.49
TRIM28-215ENST00000601150 PFDN1O60925 122 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 LY6G6CO95867 125 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 SEC11BP0C7V7 166 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 GNG5P63218 68 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 EIF5AP63241 154 aaKnown RBP11.98□□□□□ -0.49
TRIM28-215ENST00000601150 PRR9Q5T870 116 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 TMUB2Q71RG4 321 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 C5orf17Q8NAS9 161 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 LINC00467Q9BRT7 94 aa11.98□□□□□ -0.49
TRIM28-215ENST00000601150 IGHV4-4A0A075B6R2 117 aa11.97□□□□□ -0.49
TRIM28-215ENST00000601150 SERTM2A0A1B0GWG4 89 aa11.97□□□□□ -0.49
TRIM28-215ENST00000601150 DEFB130BP0DP73 79 aa11.97□□□□□ -0.49
TRIM28-215ENST00000601150 DEFB130AP0DP74 79 aa11.97□□□□□ -0.49
TRIM28-215ENST00000601150 NOP10Q9NPE3 64 aaKnown RBP11.97□□□□□ -0.49
TRIM28-215ENST00000601150 APLNQ9ULZ1 77 aa11.97□□□□□ -0.49
TRIM28-215ENST00000601150 MAP1LC3B2A6NCE7 125 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 SNURFLB1AK76 121 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 GGTLC3B5MD39 225 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 HTN3P15516 51 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 FGF8P55075 233 aaPredicted RBP11.96□□□□□ -0.49
TRIM28-215ENST00000601150 SUMO1P63165 101 aaKnown RBP11.96□□□□□ -0.49
TRIM28-215ENST00000601150 EIF4E3Q8N5X7 224 aaKnown RBP11.96□□□□□ -0.49
TRIM28-215ENST00000601150 LYSTQ99698 3801 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 MAP1LC3BQ9GZQ8 125 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 TMPRSS5Q9H3S3 457 aa11.96□□□□□ -0.49
TRIM28-215ENST00000601150 hCG_2014768A0A024R1R8 64 aa11.95□□□□□ -0.5
TRIM28-215ENST00000601150 A0A1W2PRE2 83 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms