RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 RPL35AP18077 110 aaKnown RBP11.04□□□□□ -0.64
TRIM28-207ENST00000597136 UQCC3Q6UW78 93 aa11.04□□□□□ -0.64
TRIM28-207ENST00000597136 C2CD4CQ8TF44 421 aa11.04□□□□□ -0.64
TRIM28-207ENST00000597136 LINC00479Q96M42 142 aa11.04□□□□□ -0.64
TRIM28-207ENST00000597136 SERTM2A0A1B0GWG4 89 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 KNCNA6PVL3 124 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 ZNF705DP0CH99 300 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-207ENST00000597136 ZNF705BP0CI00 300 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-207ENST00000597136 GDF5OSQ5U4N7 250 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 FOXI2Q6ZQN5 318 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 OR8A1Q8NGG7 326 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 VGLL1Q99990 258 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 SLC35B3Q9H1N7 401 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 SAV1Q9H4B6 383 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-207ENST00000597136 TRAV34A0A0B4J273 112 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 A0A0J9YX75 114 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 RBAKDNA6NC62 111 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 K7EQM0 130 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 NDUFA5Q16718 116 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 EBLN2Q6P2I7 272 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 SLC7A5P1Q8MH63 180 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 OR10J6PQ8NGY7 276 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 DERL1Q9BUN8 251 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 KLF12Q9Y4X4 402 aa11.03□□□□□ -0.64
TRIM28-207ENST00000597136 LOC102724200A0A096LPH7 203 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-207ENST00000597136 TRAV8-1A0A0A6YYK1 113 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 IGLV2-11P01706 119 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 AKR1C3P42330 323 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 CEBPGP53567 150 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 HIST1H1AQ02539 215 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-207ENST00000597136 ERCC8Q13216 396 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 C9orf47Q6ZRZ4 202 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 SGK494Q96LW2 274 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 AGPAT4-IT1Q9H0P7 198 aa11.02□□□□□ -0.65
TRIM28-207ENST00000597136 NPIPB6E9PJ23 425 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 HLA-DRB4P13762 266 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 RPL35P42766 123 aaKnown RBP11.01□□□□□ -0.65
TRIM28-207ENST00000597136 CNN1P51911 297 aaKnown RBP11.01□□□□□ -0.65
TRIM28-207ENST00000597136 ACTL10Q5JWF8 245 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 TMEM75Q8N9X5 138 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 TM2D3Q9BRN9 247 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 RETNQ9HD89 108 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 HLA-DRB4X5D2U9 266 aa11.01□□□□□ -0.65
TRIM28-207ENST00000597136 H3BMM0 161 aa11□□□□□ -0.65
TRIM28-207ENST00000597136 S100A9P06702 114 aaKnown RBP11□□□□□ -0.65
TRIM28-207ENST00000597136 TMEM183BQ1AE95 376 aa11□□□□□ -0.65
TRIM28-207ENST00000597136 FMC1Q96HJ9 113 aa11□□□□□ -0.65
TRIM28-207ENST00000597136 LINC00477Q96M19 166 aa11□□□□□ -0.65
TRIM28-207ENST00000597136 DUSP14O95147 198 aaKnown RBP10.99□□□□□ -0.65
TRIM28-207ENST00000597136 SFTA3P0C7M3 94 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 NHLRC4P0CG21 123 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-207ENST00000597136 UBE2G1P62253 170 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 FLI1Q01543 452 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-207ENST00000597136 TMEM78Q5T7P6 136 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 PARLQ9H300 379 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 PSG8Q9UQ74 426 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 FBLL1A6NHQ2 334 aaKnown RBP10.99□□□□□ -0.65
TRIM28-207ENST00000597136 CT45A10P0DMU9 189 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 ZNF138P52744 262 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 TAS2R60P59551 318 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 ZNF674Q2M3X9 581 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 SOHLH1Q5JUK2 328 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 OR4B1Q8NGF8 309 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 Q8TAT8 98 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 PPP1R14DQ9NXH3 145 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 ZNF492Q9P255 531 aa10.99□□□□□ -0.65
TRIM28-207ENST00000597136 TRBV6-1A0A0K0K1D8 114 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 TMEM218A2RU14 115 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 A8MTW9 85 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 IGKV3-20P01619 116 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 PRNTQ86SH4 94 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 Q86TA4 180 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 TRPT1Q86TN4 253 aaKnown RBP10.98□□□□□ -0.65
TRIM28-207ENST00000597136 STHQ8IWL8 128 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 SMIM7Q9BQ49 75 aa10.98□□□□□ -0.65
TRIM28-207ENST00000597136 TRBV20OR9-2A0A075B6H5 130 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 LTAP01374 205 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 AMTNQ6UX39 209 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 TVP23CQ96ET8 276 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 IGF2BP2-AS1Q96M15 143 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 CLUHP3Q96NS8 147 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 CSTL1Q9H114 145 aa10.97□□□□□ -0.65
TRIM28-207ENST00000597136 ZNF727A8MUV8 499 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 GIG44P09565 113 aaPredicted RBP10.96□□□□□ -0.65
TRIM28-207ENST00000597136 FAM74A3Q4VXF1 159 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 CENPWQ5EE01 88 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 BAGE2Q86Y30 109 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 FAM19A4Q96LR4 140 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 RCHY1Q96PM5 261 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 ZMAT4Q9H898 229 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 ZFP30Q9Y2G7 519 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 LENEPQ9Y5L5 61 aa10.96□□□□□ -0.65
TRIM28-207ENST00000597136 KIR2DL5BA0A0G2JN68 375 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 KIR2DL5BA0A0G2JPC4 375 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 C9JCJ5 164 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 GNG4P50150 75 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 APOC4P55056 127 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 DEFB135Q30KP9 77 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 KIR2DL5AQ8N109 375 aa10.95□□□□□ -0.66
TRIM28-207ENST00000597136 KIR2DL5BQ8NHK3 375 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms