RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PVALBP20472 110 aaPredicted RBP6.3□□□□□ -1.4
HDDC3-204ENST00000559834 RPL29P47914 159 aaKnown RBP6.3□□□□□ -1.4
HDDC3-204ENST00000559834 CAV2P51636 162 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 ERVFC1-1P60608 527 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 BAK1Q16611 211 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 MIC13Q5XKP0 118 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 CDPF1Q6NVV7 123 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 EIF4E3Q8N5X7 224 aaKnown RBP6.3□□□□□ -1.4
HDDC3-204ENST00000559834 UQCC1Q9NVA1 299 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 TIMM9Q9Y5J7 89 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 ICOSQ9Y6W8 199 aa6.3□□□□□ -1.4
HDDC3-204ENST00000559834 TRBV19A0A075B6N1 114 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 KLLNB2CW77 178 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 RGS13O14921 159 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 SPINK4O60575 86 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 GPX1P07203 203 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 HIST1H1EP10412 219 aaKnown RBP6.29□□□□□ -1.4
HDDC3-204ENST00000559834 S100A11P31949 105 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 RNASE4P34096 147 aaKnown RBP6.29□□□□□ -1.4
HDDC3-204ENST00000559834 TCL1AP56279 114 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 PDE6HQ13956 83 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 MRPL23Q16540 153 aaKnown RBP6.29□□□□□ -1.4
HDDC3-204ENST00000559834 IBA57Q5T440 356 aaKnown RBP6.29□□□□□ -1.4
HDDC3-204ENST00000559834 C11orf72Q8NBR9 251 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 AGPAT4-IT1Q9H0P7 198 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 AAMDCQ9H7C9 122 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 SLC39A9Q9NUM3 307 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 TMEM14CQ9P0S9 112 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 PRO0255Q9UI72 69 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 WDR83OSQ9Y284 106 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 LSM5Q9Y4Y9 91 aaKnown RBP6.29□□□□□ -1.4
HDDC3-204ENST00000559834 ABCA13Q86UQ4 5058 aa6.29□□□□□ -1.4
HDDC3-204ENST00000559834 C5orf51A6NDU8 294 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 FAM25EA8MYX2 175 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 K7EP13 123 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 M0R3E3 92 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 CST7O76096 145 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 NXPH4O95158 308 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 INAFM2P0DMQ5 153 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 HBG1P69891 147 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 HBG2P69892 147 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 ERCC8Q13216 396 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 ATP6V1FQ16864 119 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 LYPD5Q6UWN5 251 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 Q6ZRN7 208 aaPredicted RBP6.28□□□□□ -1.4
HDDC3-204ENST00000559834 NEGR1Q7Z3B1 354 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 AKAP14Q86UN6 197 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 LYPD1Q8N2G4 141 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 CHAC2Q8WUX2 184 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 ST6GAL2Q96JF0 529 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 FAM19A4Q96LR4 140 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 HHLA3Q9XRX5 114 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 KLF12Q9Y4X4 402 aa6.28□□□□□ -1.4
HDDC3-204ENST00000559834 FAM24AA6NFZ4 105 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 CRISP2P16562 243 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 SULT1A1P50225 295 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 BAXQ07812 192 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 BTN1A1Q13410 526 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 ASAH1Q13510 395 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 VWC2Q2TAL6 325 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 TMEM78Q5T7P6 136 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 C9orf47Q6ZRZ4 202 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 FRZBQ92765 325 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 C2orf50Q96LR7 162 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 ARPC5LQ9BPX5 153 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 GPN1Q9HCN4 374 aaPredicted RBP6.27□□□□□ -1.41
HDDC3-204ENST00000559834 LY96Q9Y6Y9 160 aa6.27□□□□□ -1.41
HDDC3-204ENST00000559834 IGHV1OR15-1A0A075B7D0 117 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 CCSO14618 274 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 PRAF2O60831 178 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 NDUFB4O95168 129 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 IGHV3-53P01767 116 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 FGF7P21781 194 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 BTCP35070 178 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 CRYBA4P53673 196 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 STX12Q86Y82 276 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 EXOC3-AS1Q8N2X6 119 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 TMEM252Q8N6L7 170 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 BLNKQ8WV28 456 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 C8orf49Q96NF6 230 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 VGLL1Q99990 258 aa6.26□□□□□ -1.41
HDDC3-204ENST00000559834 MRPL32Q9BYC8 188 aaKnown RBP6.26□□□□□ -1.41
HDDC3-204ENST00000559834 HSPG2P98160 4391 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 A0A087WTM6 91 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 TRGV4A0A0C4DH28 118 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 TRBV7-9A0A0J9YWB2 115 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 UBE2L5PA0A1B0GUS4 154 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 ATP6V1G1O75348 118 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 NBEAP1P0C6P0 100 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 PYYP10082 97 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 EVI2AP22794 236 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 SRIP30626 198 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 XGP55808 180 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 ZNF415Q09FC8 603 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 FHL2Q14192 279 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 ICAM4Q14773 271 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 IQCF2Q8IXL9 164 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 ZFAND2AQ8N6M9 145 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 ENKURQ8TC29 256 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 PCNPQ8WW12 178 aaKnown RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms