RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 MAP1LC3AQ9H492 121 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 UBTD1Q9HAC8 227 aa10.42□□□□□ -0.74
SHMT2-222ENST00000555774 NPFFO15130 113 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 NDUFS7O75251 213 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 RNF185Q96GF1 192 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 METTL26Q96S19 204 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 TP73-AS1Q9UF72 201 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 TAX1BP3O14907 124 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 CD5LO43866 347 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 CLEC19AQ6UXS0 136 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 U3KQE9 123 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 KALRNO60229 2985 aa10.41□□□□□ -0.74
SHMT2-222ENST00000555774 PRAC2D3DTV9 90 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 NHLH1Q02575 133 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 ERCC8Q13216 396 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 C5orf56Q8N8D9 126 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 IFI27L1Q96BM0 104 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 NXT2Q9NPJ8 142 aaKnown RBP10.4□□□□□ -0.74
SHMT2-222ENST00000555774 IGHV3-35A0A0C4DH35 117 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 CRIP2P52943 208 aaPredicted RBP10.4□□□□□ -0.74
SHMT2-222ENST00000555774 C2orf91Q6ZV80 131 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 Q6ZVH6 145 aa10.4□□□□□ -0.74
SHMT2-222ENST00000555774 IGHV3OR16-8A0A075B7F1 116 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 MUC21A0A0G2JKD1 596 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 MUC21A0A140T8X8 626 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 FAM223BA6NKX1 122 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 FGF6P10767 208 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 CACNG7P62955 275 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 MUC21Q5SSG8 566 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 IL17RELQ6ZVW7 336 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 FAM223AQ8IWN6 122 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 PIP4P2Q8N4L2 257 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 BPESC1Q9GZL8 116 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 CBY1Q9Y3M2 126 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 ARHGAP32A7KAX9 2087 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 TRAV8-2A0A0B4J237 113 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 SMKR1H3BMG3 65 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 SIVA1O15304 175 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 SFTPCP11686 197 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 SEC11AP67812 179 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 ATP5G2Q06055 141 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 TMEM78Q5T7P6 136 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 MOB4Q9Y3A3 225 aa10.39□□□□□ -0.75
SHMT2-222ENST00000555774 G3V318 75 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 VAMP3Q15836 100 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 ANKRD39Q53RE8 183 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 C9orf47Q6ZRZ4 202 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 RNF182Q8N6D2 247 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 OR9G4Q8NGQ1 327 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 PIFOQ8TCI5 191 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 AGPAT4-IT1Q9H0P7 198 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 ZZEF1O43149 2961 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 K7EP13 123 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 C19orf54Q5BKX5 351 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 PRSS57Q6UWY2 283 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 C8orf86Q6ZUL3 223 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 BOD1L2Q8IYS8 172 aa10.38□□□□□ -0.75
SHMT2-222ENST00000555774 TNFRSF6BO95407 300 aa10.37□□□□□ -0.75
SHMT2-222ENST00000555774 FCER1GP30273 86 aa10.37□□□□□ -0.75
SHMT2-222ENST00000555774 MSRB1Q9NZV6 116 aa10.37□□□□□ -0.75
SHMT2-222ENST00000555774 DMXL2Q8TDJ6 3036 aa10.37□□□□□ -0.75
SHMT2-222ENST00000555774 IGKV3D-20A0A0C4DH25 116 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 TMEM97Q5BJF2 176 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 SMIM15Q7Z3B0 74 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 LENEPQ9Y5L5 61 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 IGHV4-4A0A075B6R2 117 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 TRAV41A0A0B4J266 112 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 PRSS47A8MTI9 375 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 SMAD7O15105 426 aaKnown RBP10.36□□□□□ -0.75
SHMT2-222ENST00000555774 C9orf139Q6ZV77 190 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 OR4C5Q8NGB2 326 aa10.36□□□□□ -0.75
SHMT2-222ENST00000555774 PTPRZ1P23471 2315 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-222ENST00000555774 TPRP12270 2363 aaKnown RBP10.36□□□□□ -0.75
SHMT2-222ENST00000555774 IGHV3-66A0A0C4DH42 116 aa10.35□□□□□ -0.75
SHMT2-222ENST00000555774 LINC01548A6NM66 108 aa10.35□□□□□ -0.75
SHMT2-222ENST00000555774 Q8N8P6 123 aa10.35□□□□□ -0.75
SHMT2-222ENST00000555774 ITLN2Q8WWU7 325 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-222ENST00000555774 ABCA4P78363 2273 aa10.35□□□□□ -0.75
SHMT2-222ENST00000555774 BRI3O95415 125 aa10.35□□□□□ -0.75
SHMT2-222ENST00000555774 OR4X2Q8NGF9 303 aa10.35□□□□□ -0.75
SHMT2-222ENST00000555774 COL25A1Q9BXS0 654 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-222ENST00000555774 PEF1Q9UBV8 284 aaKnown RBP10.35□□□□□ -0.75
SHMT2-222ENST00000555774 SNAI2O43623 268 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 LEPP41159 167 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 HSD52Q0P140 79 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 GLMPQ8WWB7 406 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 CEP295Q9C0D2 2601 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 IGHV7-4-1A0A0J9YVY3 117 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 A1L4Q6 167 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 FXYD7P58549 80 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 C11orf21Q9P2W6 132 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 SMPXQ9UHP9 88 aa10.34□□□□□ -0.75
SHMT2-222ENST00000555774 IGHV1-69DA0A0B4J2H0 117 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 H3BUA1 57 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 ATP5LO75964 103 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 IGHV1-69P01742 117 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 OR2K2Q8NGT1 345 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 C16orf92Q96LL3 132 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 ZMAT4Q9H898 229 aa10.33□□□□□ -0.76
SHMT2-222ENST00000555774 A6NDN8 102 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms