RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DUSP14O95147 198 aaKnown RBP10.93□□□□□ -0.66
CPSF1-208ENST00000532560 IGKV3-20P01619 116 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 RAB5AP20339 215 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 HLA-DMBP28068 263 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 CCL20P78556 96 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 PSG9Q00887 426 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 TCEAL7Q9BRU2 100 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 SLC25A2Q9BXI2 301 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 CLEC5AQ9NY25 188 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 XCL2Q9UBD3 114 aa10.93□□□□□ -0.66
CPSF1-208ENST00000532560 CTXND1A0A1B0GTU2 59 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 S100A8P05109 93 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 SNRPCP09234 159 aaKnown RBP10.92□□□□□ -0.66
CPSF1-208ENST00000532560 CNN1P51911 297 aaKnown RBP10.92□□□□□ -0.66
CPSF1-208ENST00000532560 PDE6HQ13956 83 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 FFAR4Q5NUL3 377 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 ZFAND6Q6FIF0 208 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 AMTNQ6UX39 209 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 Q8NAQ8 132 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 FAM167A-AS1Q96KT0 104 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 MANBALQ9NQG1 85 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 X6R8D5 127 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 RYR3Q15413 4870 aa10.92□□□□□ -0.66
CPSF1-208ENST00000532560 TRBV19A0A075B6N1 114 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 MAP1LC3B2A6NCE7 125 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 H3BTX0 84 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 S100A6P06703 90 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 HIST1H1EP10412 219 aaKnown RBP10.91□□□□□ -0.66
CPSF1-208ENST00000532560 MIFP14174 115 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 MIR17HGQ75NE6 70 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 OR8A1Q8NGG7 326 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 RPUSD4Q96CM3 377 aaKnown RBP10.91□□□□□ -0.66
CPSF1-208ENST00000532560 ACTR3CQ9C0K3 210 aaPredicted RBP10.91□□□□□ -0.66
CPSF1-208ENST00000532560 MAP1LC3BQ9GZQ8 125 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 CTDSP1Q9GZU7 261 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 ZNF586Q9NXT0 402 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 FUT9Q9Y231 359 aa10.91□□□□□ -0.66
CPSF1-208ENST00000532560 TMEM250H0YL14 139 aa10.9□□□□□ -0.66
CPSF1-208ENST00000532560 PYYP10082 97 aa10.9□□□□□ -0.66
CPSF1-208ENST00000532560 FXYD7P58549 80 aa10.9□□□□□ -0.66
CPSF1-208ENST00000532560 HIST1H1AQ02539 215 aaPredicted RBP10.9□□□□□ -0.66
CPSF1-208ENST00000532560 ZNF705AQ6ZN79 300 aaPredicted RBP10.9□□□□□ -0.66
CPSF1-208ENST00000532560 CYB561D1Q8N8Q1 229 aa10.9□□□□□ -0.66
CPSF1-208ENST00000532560 YPEL4Q96NS1 127 aa10.9□□□□□ -0.66
CPSF1-208ENST00000532560 GNG13Q9P2W3 67 aa10.9□□□□□ -0.66
CPSF1-208ENST00000532560 IGHV4-28A0A0C4DH34 117 aa10.89□□□□□ -0.67
CPSF1-208ENST00000532560 A0A1B0GV50 99 aa10.89□□□□□ -0.67
CPSF1-208ENST00000532560 ZNF705FA8MVS1 300 aaPredicted RBP10.89□□□□□ -0.67
CPSF1-208ENST00000532560 AMBPP02760 352 aa10.89□□□□□ -0.67
CPSF1-208ENST00000532560 ZNF705DP0CH99 300 aaPredicted RBP10.89□□□□□ -0.67
CPSF1-208ENST00000532560 ZNF705BP0CI00 300 aaPredicted RBP10.89□□□□□ -0.67
CPSF1-208ENST00000532560 RHOBP62745 196 aa10.89□□□□□ -0.67
CPSF1-208ENST00000532560 ACOT6Q3I5F7 207 aaPredicted RBP10.89□□□□□ -0.67
CPSF1-208ENST00000532560 MRPL53Q96EL3 112 aaKnown RBP10.89□□□□□ -0.67
CPSF1-208ENST00000532560 NEU1Q99519 415 aa10.89□□□□□ -0.67
CPSF1-208ENST00000532560 C5orf52A6NGY3 159 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 NDUFB4O95168 129 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 S100A12P80511 92 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 ZNF726P1Q15940 193 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 TXNDC17Q9BRA2 123 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 OR51M1Q9H341 326 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 RFNGQ9Y644 331 aa10.88□□□□□ -0.67
CPSF1-208ENST00000532560 RBMY1A1P0DJD3 496 aaKnown RBP10.87□□□□□ -0.67
CPSF1-208ENST00000532560 RBMY1CP0DJD4 496 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 TAS2R45P59539 299 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 RBMY1FQ15415 496 aaKnown RBP10.87□□□□□ -0.67
CPSF1-208ENST00000532560 SPINK13Q1W4C9 94 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 BLNKQ8WV28 456 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 FXYD5Q96DB9 178 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 IGF2BP2-AS1Q96M15 143 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 PAXXQ9BUH6 204 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 GOLT1BQ9Y3E0 138 aa10.87□□□□□ -0.67
CPSF1-208ENST00000532560 PRAC2D3DTV9 90 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 M0R2Z0 102 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 DEFB4AO15263 64 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 OR7C2O60412 319 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 INSP01308 110 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 NBEAP1P0C6P0 100 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 SMIM6P0DI80 62 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 AKR1C3P42330 323 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 AKR1D1P51857 326 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 MEF2BQ02080 365 aaPredicted RBP10.86□□□□□ -0.67
CPSF1-208ENST00000532560 RPP25LQ8N5L8 163 aaKnown RBP10.86□□□□□ -0.67
CPSF1-208ENST00000532560 OR10G9Q8NGN4 311 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 OR10G7Q8NGN6 311 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 OR10J6PQ8NGY7 276 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 ZNF503Q96F45 646 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 SDF2L1Q9HCN8 221 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 NAT8Q9UHE5 227 aa10.86□□□□□ -0.67
CPSF1-208ENST00000532560 CSMD3Q7Z407 3707 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 NUPR2A6NF83 97 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 SMIM9A6NGZ8 99 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 CRXO43186 299 aaPredicted RBP10.85□□□□□ -0.67
CPSF1-208ENST00000532560 S100A9P06702 114 aaKnown RBP10.85□□□□□ -0.67
CPSF1-208ENST00000532560 OR10J4P0C629 311 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 PRB4P10163 310 aaPredicted RBP10.85□□□□□ -0.67
CPSF1-208ENST00000532560 C1orf158Q8N1D5 194 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 C11orf45Q8TAV5 145 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 ISOC2Q96AB3 205 aa10.85□□□□□ -0.67
CPSF1-208ENST00000532560 ODF3Q96PU9 254 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 3509.2 ms