RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ORM2P19652 201 aa11.34□□□□□ -0.59
VIM-208ENST00000497849 CAMLGP49069 296 aa11.34□□□□□ -0.59
VIM-208ENST00000497849 GNPNAT1Q96EK6 184 aaPredicted RBP11.34□□□□□ -0.59
VIM-208ENST00000497849 RNF125Q96EQ8 232 aa11.34□□□□□ -0.59
VIM-208ENST00000497849 WDR61Q9GZS3 305 aaKnown RBP11.34□□□□□ -0.59
VIM-208ENST00000497849 ISLRO14498 428 aa11.33□□□□□ -0.6
VIM-208ENST00000497849 FABP1P07148 127 aa11.33□□□□□ -0.6
VIM-208ENST00000497849 ICAM4Q14773 271 aa11.33□□□□□ -0.6
VIM-208ENST00000497849 ALKAL2Q6UX46 152 aa11.33□□□□□ -0.6
VIM-208ENST00000497849 OR1B1Q8NGR6 318 aa11.33□□□□□ -0.6
VIM-208ENST00000497849 MRPS16Q9Y3D3 137 aaKnown RBP11.33□□□□□ -0.6
VIM-208ENST00000497849 M0R2Z0 102 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 INSP01308 110 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 SEC11BP0C7V7 166 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 ATP6V0CP27449 155 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 SPINK13Q1W4C9 94 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 PATE2Q6UY27 113 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 Q6ZSN1 163 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 TMED6Q8WW62 240 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 RSG1Q9BU20 258 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 RPRMQ9NS64 109 aa11.32□□□□□ -0.6
VIM-208ENST00000497849 TRAV26-1A0A087WT03 109 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 FAM229AH3BQW9 127 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 MPDU1O75352 247 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 RAB31Q13636 194 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 RXFP4Q8TDU9 374 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 ZNF503Q96F45 646 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 NPCDR1Q9BY65 106 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 SH3BGRL3Q9H299 93 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 SLC25A32Q9H2D1 315 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 PXMP4Q9Y6I8 212 aa11.31□□□□□ -0.6
VIM-208ENST00000497849 C17orf112F2Z3M2 114 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 OR5G3P0C626 314 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 ERVFC1-1P60608 527 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 B2MP61769 119 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 SELENOTP62341 195 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 HAMPP81172 84 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 OR5I1Q13606 314 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 OR2G3Q8NGZ4 309 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 PSMG3Q9BT73 122 aaPredicted RBP11.3□□□□□ -0.6
VIM-208ENST00000497849 TIMM9Q9Y5J7 89 aa11.3□□□□□ -0.6
VIM-208ENST00000497849 A0A0J9YY99 117 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 EREGO14944 169 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 HYPMO75409 117 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 RPL29P47914 159 aaKnown RBP11.29□□□□□ -0.6
VIM-208ENST00000497849 CNN1P51911 297 aaKnown RBP11.29□□□□□ -0.6
VIM-208ENST00000497849 GCSAMLQ5JQS6 135 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 C1orf194Q5T5A4 169 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 KCNIP2Q9NS61 270 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 SLC39A9Q9NUM3 307 aa11.29□□□□□ -0.6
VIM-208ENST00000497849 LRP1Q07954 4544 aaKnown RBP11.29□□□□□ -0.6
VIM-208ENST00000497849 DNAH8Q96JB1 4490 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 TRAV12-2A0A075B6T6 113 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 DNAH10OSP0CZ25 163 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 M6PRP20645 277 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 HOXA5P20719 270 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 PLP1P60201 277 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 RAB14P61106 215 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 SERF2P84101 59 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 FAM74A1Q5RGS3 127 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 TMEM37Q8WXS4 190 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 C16orf92Q96LL3 132 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 PFDN2Q9UHV9 154 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 HIGD1AQ9Y241 93 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 TNFRSF18Q9Y5U5 241 aa11.28□□□□□ -0.6
VIM-208ENST00000497849 TRAV5A0A0B4J249 113 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 KRTAP29-1A8MX34 341 aaPredicted RBP11.27□□□□□ -0.61
VIM-208ENST00000497849 UMAD1C9J7I0 102 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 SULT1A2P50226 295 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 AKR1C8PQ5T2L2 129 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 MORN5Q5VZ52 161 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 LRRC20Q8TCA0 184 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 SLC25A39Q9BZJ4 359 aaPredicted RBP11.27□□□□□ -0.61
VIM-208ENST00000497849 SLC25A22Q9H936 323 aa11.27□□□□□ -0.61
VIM-208ENST00000497849 TIMM8BQ9Y5J9 83 aaPredicted RBP11.27□□□□□ -0.61
VIM-208ENST00000497849 A0A087WTM6 91 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 ZNF98A6NK75 572 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 COX7A2P2O60397 106 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 EIF3GO75821 320 aaKnown RBP eCLIP11.26□□□□□ -0.61
VIM-208ENST00000497849 RAB5CP51148 216 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 FFAR4Q5NUL3 377 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 Q6ZRG5 221 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 OR8I2Q8N0Y5 310 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 C16orf74Q96GX8 76 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 LINC01587Q99440 93 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 DNAJC4Q9NNZ3 241 aa11.26□□□□□ -0.61
VIM-208ENST00000497849 NOP10Q9NPE3 64 aaKnown RBP11.26□□□□□ -0.61
VIM-208ENST00000497849 H3BRN7 92 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 DUSP14O95147 198 aaKnown RBP11.25□□□□□ -0.61
VIM-208ENST00000497849 TAS2R60P59551 318 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 CLLU1Q5K131 121 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 SAMD13Q5VXD3 122 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 C10orf113Q5VZT2 155 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 LINC00612Q8N6U2 182 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 SHANK2-AS3Q9BTD1 123 aa11.25□□□□□ -0.61
VIM-208ENST00000497849 H3BNG1 76 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 MBP02144 154 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 SNRPCP09234 159 aaKnown RBP11.24□□□□□ -0.61
VIM-208ENST00000497849 HTN1P15515 57 aa11.24□□□□□ -0.61
VIM-208ENST00000497849 GCSHP23434 173 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms