RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520		H3BTX0	84 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	ZNF253	O75346	499 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	DUSP14	O95147	198 aa	Known RBP	6.42	□□□□□ -1.38
USP4-213	ENST00000488520	HBE1	P02100	147 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	PPT1	P50897	306 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	APRG1	Q8IVJ8	170 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	OR10J6P	Q8NGY7	276 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	RXFP4	Q8TDU9	374 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	C17orf77	Q96MU5	243 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	MAP6D1	Q9H9H5	199 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	ZNF586	Q9NXT0	402 aa		6.42	□□□□□ -1.38
USP4-213	ENST00000488520	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	6.41	□□□□□ -1.38
USP4-213	ENST00000488520	MAP1LC3B2	A6NCE7	125 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	ZNF705E	A8MWA4	302 aa	Predicted RBP	6.41	□□□□□ -1.38
USP4-213	ENST00000488520	BOLA2-SMG1P6	H3BVE0	249 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	MRPS12	O15235	138 aa	Known RBP	6.41	□□□□□ -1.38
USP4-213	ENST00000488520	IFNA7	P01567	189 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	ARL14EPL	P0DKL9	152 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	IGLC2	P0DOY2	106 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	GCHFR	P30047	84 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	SULT1A2	P50226	295 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	APOC4	P55056	127 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	ACTL10	Q5JWF8	245 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	IGFL4	Q6B9Z1	124 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	CEMP1	Q6PRD7	247 aa	Predicted RBP	6.41	□□□□□ -1.38
USP4-213	ENST00000488520	ALKAL2	Q6UX46	152 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	OR4B1	Q8NGF8	309 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	FAM167A-AS1	Q96KT0	104 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	NKX6-2	Q9C056	277 aa	Predicted RBP	6.41	□□□□□ -1.38
USP4-213	ENST00000488520	MAP1LC3B	Q9GZQ8	125 aa		6.41	□□□□□ -1.38
USP4-213	ENST00000488520	ZNF331	Q9NQX6	463 aa	Predicted RBP	6.41	□□□□□ -1.38
USP4-213	ENST00000488520	AGRN	O00468	2067 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520		F6UZH7	168 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520		K7EQM0	130 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	EIF3G	O75821	320 aa	Known RBP eCLIP	6.4	□□□□□ -1.38
USP4-213	ENST00000488520	RPL35A	P18077	110 aa	Known RBP	6.4	□□□□□ -1.38
USP4-213	ENST00000488520	FGF8	P55075	233 aa	Predicted RBP	6.4	□□□□□ -1.38
USP4-213	ENST00000488520	FOXI2	Q6ZQN5	318 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	FAM24B	Q8N5W8	94 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	RNF182	Q8N6D2	247 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	MBD3L1	Q8WWY6	194 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	RPUSD4	Q96CM3	377 aa	Known RBP	6.4	□□□□□ -1.38
USP4-213	ENST00000488520	FXYD5	Q96DB9	178 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	SAT2	Q96F10	170 aa	Predicted RBP	6.4	□□□□□ -1.38
USP4-213	ENST00000488520		Q9H3A6	140 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	OTOR	Q9NRC9	128 aa		6.4	□□□□□ -1.38
USP4-213	ENST00000488520	KLK5	Q9Y337	293 aa	Predicted RBP	6.4	□□□□□ -1.38
USP4-213	ENST00000488520	VPS13D	Q5THJ4	4388 aa		6.4	□□□□□ -1.39
USP4-213	ENST00000488520		A0A1B0GV50	99 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	KNCN	A6PVL3	124 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	IFNA1	P01562	189 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	SLC25A5	P05141	298 aa	Known RBP	6.39	□□□□□ -1.39
USP4-213	ENST00000488520	FHIT	P49789	147 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	RAB14	P61106	215 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	DEFB135	Q30KP9	77 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	ODF3L2	Q3SX64	289 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	CST9LP1	Q5W188	147 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	EXOC3-AS1	Q8N2X6	119 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	CSTL1	Q9H114	145 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	SAV1	Q9H4B6	383 aa	Predicted RBP	6.39	□□□□□ -1.39
USP4-213	ENST00000488520	KIAA1109	Q2LD37	5005 aa		6.39	□□□□□ -1.39
USP4-213	ENST00000488520	TRAV8-2	A0A0B4J237	113 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520		A0A1W2PRE2	83 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	ZNF705F	A8MVS1	300 aa	Predicted RBP	6.38	□□□□□ -1.39
USP4-213	ENST00000488520	UBE2C	O00762	179 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	SOCS3	O14543	225 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	SPRY2	O43597	315 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	IGKV3-20	P01619	116 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	UBE2G2	P60604	165 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	HIST1H1A	Q02539	215 aa	Predicted RBP	6.38	□□□□□ -1.39
USP4-213	ENST00000488520	ZNF726P1	Q15940	193 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	TMEM78	Q5T7P6	136 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	MORN3	Q6PF18	240 aa	Predicted RBP	6.38	□□□□□ -1.39
USP4-213	ENST00000488520	TEX261	Q6UWH6	196 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	MRPL53	Q96EL3	112 aa	Known RBP	6.38	□□□□□ -1.39
USP4-213	ENST00000488520	ZNF503	Q96F45	646 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	LINC00477	Q96M19	166 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	C1QTNF4	Q9BXJ3	329 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	RPH3AL	Q9UNE2	315 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	RYR1	P21817	5038 aa		6.38	□□□□□ -1.39
USP4-213	ENST00000488520	DNAH6	Q9C0G6	4158 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	KIR2DL5B	A0A0G2JN68	375 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	KIR2DL5B	A0A0G2JPC4	375 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520		A0A0J9YX75	114 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520		H3BMM0	161 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	SLC17A3	O00476	420 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	NDUFB4	O95168	129 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	HLA-DRB4	P13762	266 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	HLA-DMB	P28068	263 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	TSPO	P30536	169 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520		Q6ZSN1	163 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	SSX7	Q7RTT5	188 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	KIR2DL5A	Q8N109	375 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	ARL6IP6	Q8N6S5	226 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	OR8A1	Q8NGG7	326 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	KIR2DL5B	Q8NHK3	375 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	PHLDA1	Q8WV24	401 aa	Predicted RBP	6.37	□□□□□ -1.39
USP4-213	ENST00000488520	HLA-DRB4	X5D2U9	266 aa		6.37	□□□□□ -1.39
USP4-213	ENST00000488520	TRAV1-1	A0A0B4J248	108 aa		6.36	□□□□□ -1.39
USP4-213	ENST00000488520	SERTM2	A0A1B0GWG4	89 aa		6.36	□□□□□ -1.39

Retrieved 100 of 20,778 RNA–protein pairs in 67 ms