RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 AGPAT4-IT1Q9H0P7 198 aa10.6□□□□□ -0.71
USP4-212ENST00000486549 KLK5Q9Y337 293 aaPredicted RBP10.6□□□□□ -0.71
USP4-212ENST00000486549 A0A0D9SG52 128 aa10.59□□□□□ -0.71
USP4-212ENST00000486549 KANTRA0A1W2PQU2 76 aa10.59□□□□□ -0.71
USP4-212ENST00000486549 GCHFRP30047 84 aa10.59□□□□□ -0.71
USP4-212ENST00000486549 TMEM256Q8N2U0 113 aa10.59□□□□□ -0.71
USP4-212ENST00000486549 LINC00477Q96M19 166 aa10.59□□□□□ -0.71
USP4-212ENST00000486549 OTORQ9NRC9 128 aa10.59□□□□□ -0.71
USP4-212ENST00000486549 YTHDF2Q9Y5A9 579 aaKnown RBP10.59□□□□□ -0.71
USP4-212ENST00000486549 TRAV12-3A0A0B4J271 114 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 PGPA6NDG6 321 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 BCL2L11O43521 198 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 PFDN1O60925 122 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 FAM74A1Q5RGS3 127 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 C9orf47Q6ZRZ4 202 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 Q6ZTC4 211 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 Q8TAT8 98 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 CMTM2Q8TAZ6 248 aa10.58□□□□□ -0.72
USP4-212ENST00000486549 ZNF471Q9BX82 626 aaPredicted RBP10.58□□□□□ -0.72
USP4-212ENST00000486549 CTXND1A0A1B0GTU2 59 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 CXorf1O96002 111 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 SPART-AS1P0CW21 52 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 AZU1P20160 251 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 ZNF726P1Q15940 193 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 C12orf74Q32Q52 190 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 FAM222AQ5U5X8 452 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 TMUB2Q71RG4 321 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 RXFP4Q8TDU9 374 aa10.57□□□□□ -0.72
USP4-212ENST00000486549 RYR3Q15413 4870 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 PLECQ15149 4684 aaKnown RBP10.56□□□□□ -0.72
USP4-212ENST00000486549 C7orf71A4D174 169 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 DIRC3C9JPN6 131 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 H7BYZ3 331 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 SLC25A5P05141 298 aaKnown RBP10.56□□□□□ -0.72
USP4-212ENST00000486549 RNASE4P34096 147 aaKnown RBP10.56□□□□□ -0.72
USP4-212ENST00000486549 ZNF138P52744 262 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 TAS2R60P59551 318 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 GNG5P63218 68 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 BTN1A1Q13410 526 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 TCTE3Q8IZS6 198 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 FAM19A4Q96LR4 140 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 C20orf144Q9BQM9 153 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 NIPSNAP3BQ9BS92 247 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 PLA2G2EQ9NZK7 142 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 ZNF492Q9P255 531 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 DKK2Q9UBU2 259 aa10.56□□□□□ -0.72
USP4-212ENST00000486549 TRAV10A0A0B4J240 114 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 RBAKDNA6NC62 111 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 C11orf94C9JXX5 98 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 GPX1P07203 203 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 FGF8P55075 233 aaPredicted RBP10.55□□□□□ -0.72
USP4-212ENST00000486549 CD300CQ08708 224 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 GOLT1AQ6ZVE7 132 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 AKAP14Q86UN6 197 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 TMEM167BQ9NRX6 74 aa10.55□□□□□ -0.72
USP4-212ENST00000486549 TEX48A0A1B0GUV7 120 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 MAP1LC3B2A6NCE7 125 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 KLLNB2CW77 178 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 CRISP2P16562 243 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 PRR9Q5T870 116 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 C2CD4CQ8TF44 421 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 C16orf74Q96GX8 76 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 MAP1LC3BQ9GZQ8 125 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 TMPRSS5Q9H3S3 457 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 LYSTQ99698 3801 aa10.54□□□□□ -0.72
USP4-212ENST00000486549 DEFB131BA0A096LNP1 70 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 FHITP49789 147 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 UBE2G2P60604 165 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 CCDC28AQ8IWP9 274 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 ZFAND2AQ8N6M9 145 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 SUN5Q8TC36 379 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 TMEM263Q8WUH6 116 aaKnown RBP10.53□□□□□ -0.72
USP4-212ENST00000486549 ALMS1Q8TCU4 4167 aa10.53□□□□□ -0.72
USP4-212ENST00000486549 SACSQ9NZJ4 4579 aa10.52□□□□□ -0.72
USP4-212ENST00000486549 TRAV8-1A0A0A6YYK1 113 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 PLAC8L1A1L4L8 177 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 GGTLC3B5MD39 225 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 IGLL5B9A064 214 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 C1QBP02746 253 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 SEC11BP0C7V7 166 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 TPT1P13693 172 aaKnown RBP10.52□□□□□ -0.73
USP4-212ENST00000486549 HTN3P15516 51 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 DAD1P61803 113 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 SUMO1P63165 101 aaKnown RBP10.52□□□□□ -0.73
USP4-212ENST00000486549 EIF5AP63241 154 aaKnown RBP10.52□□□□□ -0.73
USP4-212ENST00000486549 LGALSLQ3ZCW2 172 aaPredicted RBP10.52□□□□□ -0.73
USP4-212ENST00000486549 C5orf17Q8NAS9 161 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 FAM213BQ8TBF2 198 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 SGK494Q96LW2 274 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 PYGO2Q9BRQ0 406 aa10.52□□□□□ -0.73
USP4-212ENST00000486549 LYRM9A8MSI8 78 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 NMBP08949 121 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 DEFB130BP0DP73 79 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 DEFB130AP0DP74 79 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 Q6ZQT7 251 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 ZNF493Q6ZR52 646 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 RNASE8Q8TDE3 154 aaKnown RBP10.51□□□□□ -0.73
USP4-212ENST00000486549 TMED6Q8WW62 240 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 RYR2Q92736 4967 aa10.51□□□□□ -0.73
USP4-212ENST00000486549 TRBV7-9A0A0J9YWB2 115 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms