RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ADCYAP1P18509 176 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 AKR1C3P42330 323 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 CNN1P51911 297 aaKnown RBP12.62□□□□□ -0.39
VIM-205ENST00000485947 CEBPGP53567 150 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 C2CD4CQ8TF44 421 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 DCANP1Q8TF63 244 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 LINC00052Q96N35 136 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 MS4A6AQ9H2W1 248 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 LOC102724200A0A096LPH7 203 aaPredicted RBP12.61□□□□□ -0.39
VIM-205ENST00000485947 DNASE2O00115 360 aaPredicted RBP12.61□□□□□ -0.39
VIM-205ENST00000485947 PSG3Q16557 428 aa12.61□□□□□ -0.39
VIM-205ENST00000485947 FBLL1A6NHQ2 334 aaKnown RBP12.6□□□□□ -0.39
VIM-205ENST00000485947 ZNF727A8MUV8 499 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 DIRC3C9JPN6 131 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 K7EQG2 157 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 TAS2R60P59551 318 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 GNG5P63218 68 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 SMIM7Q9BQ49 75 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 RPH3ALQ9UNE2 315 aa12.6□□□□□ -0.39
VIM-205ENST00000485947 HUWE1Q7Z6Z7 4374 aaKnown RBP12.6□□□□□ -0.39
VIM-205ENST00000485947 IGKV3-7A0A075B6H7 116 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 RBAKDNA6NC62 111 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 M0R3E3 92 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 UBE2G1P62253 170 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 ZNF674Q2M3X9 581 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 TMEM75Q8N9X5 138 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 FMC1Q96HJ9 113 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 NIPSNAP3BQ9BS92 247 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 KLF12Q9Y4X4 402 aa12.59□□□□□ -0.39
VIM-205ENST00000485947 KIR2DL5BA0A0G2JN68 375 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 KIR2DL5BA0A0G2JPC4 375 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 TRBV6-1A0A0K0K1D8 114 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 C9JCJ5 164 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 UBE2CO00762 179 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 HLA-DMBP28068 263 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 RPL35P42766 123 aaKnown RBP12.58□□□□□ -0.4
VIM-205ENST00000485947 APOC4P55056 127 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 SNRPD3P62318 126 aaKnown RBP12.58□□□□□ -0.4
VIM-205ENST00000485947 TMEM183BQ1AE95 376 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 IGFL4Q6B9Z1 124 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 GOLT1AQ6ZVE7 132 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 KIR2DL5AQ8N109 375 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 GBGT1Q8N5D6 347 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 RNF182Q8N6D2 247 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 KIR2DL5BQ8NHK3 375 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 DERL1Q9BUN8 251 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 WFDC10AQ9H1F0 79 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 NAT8Q9UHE5 227 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 TP53TG1Q9Y2A0 90 aa12.58□□□□□ -0.4
VIM-205ENST00000485947 DNAH1Q9P2D7 4330 aa12.57□□□□□ -0.4
VIM-205ENST00000485947 PNRC1Q12796 327 aaPredicted RBP12.57□□□□□ -0.4
VIM-205ENST00000485947 Q6ZWC4 215 aa12.57□□□□□ -0.4
VIM-205ENST00000485947 WFDC3Q8IUB2 231 aa12.57□□□□□ -0.4
VIM-205ENST00000485947 ZNF738Q8NE65 137 aa12.57□□□□□ -0.4
VIM-205ENST00000485947 SELENOKQ9Y6D0 94 aa12.57□□□□□ -0.4
VIM-205ENST00000485947 LY96Q9Y6Y9 160 aa12.57□□□□□ -0.4
VIM-205ENST00000485947 APOC3P02656 99 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 TFPI2P48307 235 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 TMEM241Q24JQ0 296 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 SVBPQ8N300 66 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 TVP23CQ96ET8 276 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 SMIM12Q96EX1 92 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 C20orf173Q96LM9 149 aa12.56□□□□□ -0.4
VIM-205ENST00000485947 ZNF705FA8MVS1 300 aaPredicted RBP12.55□□□□□ -0.4
VIM-205ENST00000485947 ODF3L2Q3SX64 289 aa12.55□□□□□ -0.4
VIM-205ENST00000485947 IGF2BP2-AS1Q96M15 143 aa12.55□□□□□ -0.4
VIM-205ENST00000485947 SDF2L1Q9HCN8 221 aa12.55□□□□□ -0.4
VIM-205ENST00000485947 GNG4P50150 75 aa12.54□□□□□ -0.4
VIM-205ENST00000485947 FLI1Q01543 452 aaPredicted RBP12.54□□□□□ -0.4
VIM-205ENST00000485947 CENPWQ5EE01 88 aa12.54□□□□□ -0.4
VIM-205ENST00000485947 Q86TA4 180 aa12.54□□□□□ -0.4
VIM-205ENST00000485947 DNAH7Q8WXX0 4024 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 TRBV20OR9-2A0A075B6H5 130 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 IGKV2-40A0A087WW87 121 aaPredicted RBP12.53□□□□□ -0.4
VIM-205ENST00000485947 TRAV34A0A0B4J273 112 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 SNAPINO95295 136 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 LTAP01374 205 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 IGKV2D-40P01614 121 aaPredicted RBP12.53□□□□□ -0.4
VIM-205ENST00000485947 IGLV2-11P01706 119 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 ZNF688P0C7X2 276 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 OR10J6PQ8NGY7 276 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 LINC00479Q96M42 142 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 PSG8Q9UQ74 426 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 ZFP30Q9Y2G7 519 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 LYSTQ99698 3801 aa12.53□□□□□ -0.4
VIM-205ENST00000485947 PRAC2D3DTV9 90 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 PSMG4Q5JS54 123 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 C9orf47Q6ZRZ4 202 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 BAGE2Q86Y30 109 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 FAM24BQ8N5W8 94 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 OR8A1Q8NGG7 326 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 OVOL2Q9BRP0 275 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 RETNQ9HD89 108 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 PPP1R14DQ9NXH3 145 aa12.52□□□□□ -0.41
VIM-205ENST00000485947 TRAV8-1A0A0A6YYK1 113 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 B4DEV8 164 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 NPIPB6E9PJ23 425 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 RPL23P62829 140 aaKnown RBP12.51□□□□□ -0.41
VIM-205ENST00000485947 TMEM78Q5T7P6 136 aa12.51□□□□□ -0.41
VIM-205ENST00000485947 LINC01551Q86U37 167 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms