RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 ZNF586Q9NXT0 402 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 TIMM9Q9Y5J7 89 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 URGCP-MRPS24S4R325 110 aa6.25□□□□□ -1.41
USP54-212ENST00000480210 UBE2L5PA0A1B0GUS4 154 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 G3V4G9 280 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 BUB3O43684 328 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 LINC00869P0C866 280 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 ATP6V0CP27449 155 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 LYZP61626 148 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 PRR20EP86478 221 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 PRR20CP86479 221 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 PRR20DP86480 221 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 PRR20BP86481 221 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 PRR20AP86496 221 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 CD300EQ496F6 205 aaPredicted RBP6.24□□□□□ -1.41
USP54-212ENST00000480210 CDPF1Q6NVV7 123 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 C16orf54Q6UWD8 224 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 ADAMTSL5Q6ZMM2 481 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 TCF24Q7RTU0 167 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 STPG3Q8N7X2 389 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 CMTM2Q8TAZ6 248 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 MGST2Q99735 147 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 FAM110AQ9BQ89 295 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 VPS25Q9BRG1 176 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 GGTLC1Q9BX51 225 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 NPCDR1Q9BY65 106 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 CSTL1Q9H114 145 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 WFDC1Q9HC57 220 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 SLC39A9Q9NUM3 307 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 HIGD1AQ9Y241 93 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 ZNF256Q9Y2P7 627 aaPredicted RBP6.24□□□□□ -1.41
USP54-212ENST00000480210 COX11Q9Y6N1 276 aa6.24□□□□□ -1.41
USP54-212ENST00000480210 OR4C46A6NHA9 309 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 ZNF207O43670 478 aaKnown RBP6.23□□□□□ -1.41
USP54-212ENST00000480210 GP9P14770 177 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 ORM2P19652 201 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 Q0VG73 95 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 PSG3Q16557 428 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 FAM90A2PQ658T7 463 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 OR1B1Q8NGR6 318 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 NUDT11Q96G61 164 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 RARRES2Q99969 163 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 SMIM7Q9BQ49 75 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 FUT9Q9Y231 359 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 LAMTOR2Q9Y2Q5 125 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 PXMP4Q9Y6I8 212 aa6.23□□□□□ -1.41
USP54-212ENST00000480210 ZNF785A8K8V0 405 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 PDE6DO43924 150 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 COX7A2P2O60397 106 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 OR5G3P0C626 314 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 RPL7P18124 248 aaKnown RBP6.22□□□□□ -1.41
USP54-212ENST00000480210 GATA2P23769 480 aaPredicted RBP6.22□□□□□ -1.41
USP54-212ENST00000480210 HNRNPA3P51991 378 aaKnown RBP6.22□□□□□ -1.41
USP54-212ENST00000480210 C10orf113Q5VZT2 155 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 MIC13Q5XKP0 118 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 PRR27Q6MZM9 219 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 WDR73Q6P4I2 378 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 SIGLEC15Q6ZMC9 328 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 GTSCR1Q86UQ5 136 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 OR8I2Q8N0Y5 310 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 GLMPQ8WWB7 406 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 RPUSD4Q96CM3 377 aaKnown RBP6.22□□□□□ -1.41
USP54-212ENST00000480210 SHANK2-AS3Q9BTD1 123 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 MRPL32Q9BYC8 188 aaKnown RBP6.22□□□□□ -1.41
USP54-212ENST00000480210 SLC25A39Q9BZJ4 359 aaPredicted RBP6.22□□□□□ -1.41
USP54-212ENST00000480210 SMIM3Q9BZL3 60 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 CLEC5AQ9NY25 188 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 PLA2G2EQ9NZK7 142 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 TRAPPC1Q9Y5R8 145 aa6.22□□□□□ -1.41
USP54-212ENST00000480210 MGAM2Q2M2H8 2515 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 VWFP04275 2813 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 IGHV3OR16-8A0A075B7F1 116 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 H3BRN7 92 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 RPL11P62913 178 aaKnown RBP6.21□□□□□ -1.42
USP54-212ENST00000480210 MEF2BQ02080 365 aaPredicted RBP6.21□□□□□ -1.42
USP54-212ENST00000480210 OR10J3Q5JRS4 329 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 LINC00305Q7Z4B0 112 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 BPIFA4PQ86YQ2 179 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 TMEM61Q8N0U2 210 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 STXBP6Q8NFX7 210 aa6.21□□□□□ -1.42
USP54-212ENST00000480210 A0A1B0GV72 72 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 A8MZ25 164 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 TMEM238C9JI98 176 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 APOHP02749 345 aaPredicted RBP6.2□□□□□ -1.42
USP54-212ENST00000480210 ID1P41134 155 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 TAS2R45P59539 299 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 KRTAP10-11P60412 298 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 RHOBP62745 196 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 ADIRFQ15847 76 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 PATE2Q6UY27 113 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 TMEM37Q8WXS4 190 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 MS4A6AQ9H2W1 248 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 NRN1Q9NPD7 142 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 GNG13Q9P2W3 67 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 LY96Q9Y6Y9 160 aa6.2□□□□□ -1.42
USP54-212ENST00000480210 IGHV3OR16-13A0A075B7E8 117 aa6.19□□□□□ -1.42
USP54-212ENST00000480210 A0A087X0K7 114 aa6.19□□□□□ -1.42
USP54-212ENST00000480210 IGHV3-49A0A0A0MS15 119 aa6.19□□□□□ -1.42
USP54-212ENST00000480210 IGHV3-74A0A0B4J1X5 117 aa6.19□□□□□ -1.42
USP54-212ENST00000480210 A0A1W2PPV4 95 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms