RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NEGR1Q7Z3B1 354 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 BPIFA4PQ86YQ2 179 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 ZBTB8BQ8NAP8 495 aaPredicted RBP11.59□□□□□ -0.55
VIM-204ENST00000478746 SYT8Q8NBV8 401 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 NPVFQ9HCQ7 196 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 HHLA3Q9XRX5 114 aa11.59□□□□□ -0.55
VIM-204ENST00000478746 H3BTX0 84 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 SSNA1O43805 119 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 SPINK4O60575 86 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 RRAS2P62070 204 aaPredicted RBP11.58□□□□□ -0.56
VIM-204ENST00000478746 TEPPQ6URK8 271 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 LINC00305Q7Z4B0 112 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 NTN5Q8WTR8 489 aaPredicted RBP11.58□□□□□ -0.56
VIM-204ENST00000478746 ST6GAL2Q96JF0 529 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 KLF12Q9Y4X4 402 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 ALG5Q9Y673 324 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 PXMP4Q9Y6I8 212 aa11.58□□□□□ -0.56
VIM-204ENST00000478746 C7orf66A4D0T2 115 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 K7EPK0 472 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 SLC17A3O00476 420 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 SLC25A5P05141 298 aaKnown RBP11.57□□□□□ -0.56
VIM-204ENST00000478746 CRYBA4P53673 196 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 PXDC1Q5TGL8 231 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 EIF4E3Q8N5X7 224 aaKnown RBP11.57□□□□□ -0.56
VIM-204ENST00000478746 C8orf49Q96NF6 230 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 FAM30AQ9NZY2 134 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 HMCN2Q8NDA2 5059 aa11.57□□□□□ -0.56
VIM-204ENST00000478746 C7orf71A4D174 169 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 FAM25EA8MYX2 175 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 FNDC10F2Z333 226 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 CCSO14618 274 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 PSCAO43653 123 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 SSSCA1O60232 199 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 CCNKO75909 580 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 SLC38A11Q08AI6 406 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 ANXA2RQ3ZCQ2 193 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 WFDC10BQ8IUB3 73 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 DEFB104AQ8WTQ1 72 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 SMIM8Q96KF7 97 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 MGAT4CQ9UBM8 478 aa11.56□□□□□ -0.56
VIM-204ENST00000478746 DNAH8Q96JB1 4490 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 C5orf51A6NDU8 294 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 GOSR2O14653 212 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 CRYGDP07320 174 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 METTL15P1P0C7V9 234 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 TCL1AP56279 114 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 FHL2Q14192 279 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 IAH1Q2TAA2 248 aaPredicted RBP11.55□□□□□ -0.56
VIM-204ENST00000478746 OR10P1Q8NGE3 313 aa11.55□□□□□ -0.56
VIM-204ENST00000478746 SAT2Q96F10 170 aaPredicted RBP11.55□□□□□ -0.56
VIM-204ENST00000478746 LRCOL1A6NCL2 159 aa11.54□□□□□ -0.56
VIM-204ENST00000478746 E5RGE8 158 aa11.54□□□□□ -0.56
VIM-204ENST00000478746 TMEM14EPQ6UXP3 125 aa11.54□□□□□ -0.56
VIM-204ENST00000478746 ZNF546Q86UE3 836 aa11.54□□□□□ -0.56
VIM-204ENST00000478746 C10orf126Q8N4M7 172 aa11.54□□□□□ -0.56
VIM-204ENST00000478746 MRPL32Q9BYC8 188 aaKnown RBP11.54□□□□□ -0.56
VIM-204ENST00000478746 H3BQ15 152 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 AGPAT2O15120 278 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 COX7A2P2O60397 106 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 SRIP30626 198 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 RNASE4P34096 147 aaKnown RBP11.53□□□□□ -0.56
VIM-204ENST00000478746 CD300CQ08708 224 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 VGLL1Q99990 258 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 MED28Q9H204 178 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 MRPL16Q9NX20 251 aaKnown RBP11.53□□□□□ -0.56
VIM-204ENST00000478746 GSKIPQ9P0R6 139 aa11.53□□□□□ -0.56
VIM-204ENST00000478746 TRGV4A0A0C4DH28 118 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 K7EQD1 137 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 MPDU1O75352 247 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 C1QBP02746 253 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 IGLC2P0DOY2 106 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 ERCC8Q13216 396 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 BTN1A1Q13410 526 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 OPCMLQ14982 345 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 IBA57Q5T440 356 aaKnown RBP11.52□□□□□ -0.57
VIM-204ENST00000478746 MORN5Q5VZ52 161 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 TMEM37Q8WXS4 190 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 C2orf50Q96LR7 162 aa11.52□□□□□ -0.57
VIM-204ENST00000478746 KLLNB2CW77 178 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 SIX6O95475 246 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 SCGB1D2O95969 90 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 GUK1Q16774 197 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 C10orf113Q5VZT2 155 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 LINC00528Q8N1L1 170 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 Q8N814 137 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 LINC00477Q96M19 166 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 TP53TG3Q9ULZ0 132 aa11.51□□□□□ -0.57
VIM-204ENST00000478746 RGS13O14921 159 aa11.5□□□□□ -0.57
VIM-204ENST00000478746 TSC22D2O75157 780 aa11.5□□□□□ -0.57
VIM-204ENST00000478746 GPX1P07203 203 aa11.5□□□□□ -0.57
VIM-204ENST00000478746 TAS2R30P59541 319 aa11.5□□□□□ -0.57
VIM-204ENST00000478746 PCNPQ8WW12 178 aaKnown RBP11.5□□□□□ -0.57
VIM-204ENST00000478746 GYPEP15421 78 aa11.49□□□□□ -0.57
VIM-204ENST00000478746 CYCSP99999 105 aaKnown RBP11.49□□□□□ -0.57
VIM-204ENST00000478746 ZNF415Q09FC8 603 aa11.49□□□□□ -0.57
VIM-204ENST00000478746 ARL16Q0P5N6 197 aa11.49□□□□□ -0.57
VIM-204ENST00000478746 GGACTQ9BVM4 153 aa11.49□□□□□ -0.57
VIM-204ENST00000478746 AGPAT4-IT1Q9H0P7 198 aa11.49□□□□□ -0.57
VIM-204ENST00000478746 DNAJC4Q9NNZ3 241 aa11.49□□□□□ -0.57
VIM-204ENST00000478746 PLA2G2DQ9UNK4 145 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms