RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CCNKO75909 580 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 METTL15P1P0C7V9 234 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 CXCL2P19875 107 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 ANXA7P20073 488 aaKnown RBP5.09□□□□□ -1.59
USP54-208ENST00000461520 BTCP35070 178 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 RHOBP62745 196 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 HIST1H1AQ02539 215 aaPredicted RBP5.09□□□□□ -1.59
USP54-208ENST00000461520 PSG3Q16557 428 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 SOHLH1Q5JUK2 328 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 PATE2Q6UY27 113 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 ZNF546Q86UE3 836 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 BAP18Q8IXM2 172 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 SDHCQ99643 169 aaPredicted RBP5.09□□□□□ -1.59
USP54-208ENST00000461520 SLC50A1Q9BRV3 221 aa5.09□□□□□ -1.59
USP54-208ENST00000461520 TRAV12-2A0A075B6T6 113 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 LINC00854A0A1B0GVQ3 168 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 PLAC8L1A1L4L8 177 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 C7orf66A4D0T2 115 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 PRAC2D3DTV9 90 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 GOSR2O14653 212 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 AGPAT2O15120 278 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 MRPS12O15235 138 aaKnown RBP5.08□□□□□ -1.6
USP54-208ENST00000461520 PRM2P04554 102 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 DEFB130BP0DP73 79 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 DEFB130AP0DP74 79 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 IL7P13232 177 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 AZU1P20160 251 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 CDKN1BP46527 198 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 TAS2R60P59551 318 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 SLC38A11Q08AI6 406 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 LCN15Q6UWW0 184 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 LINC00305Q7Z4B0 112 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 BPIFA4PQ86YQ2 179 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 RPUSD4Q96CM3 377 aaKnown RBP5.08□□□□□ -1.6
USP54-208ENST00000461520 C16orf74Q96GX8 76 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 LINC01587Q99440 93 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 C20orf144Q9BQM9 153 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 ZNF331Q9NQX6 463 aaPredicted RBP5.08□□□□□ -1.6
USP54-208ENST00000461520 PPP1R14DQ9NXH3 145 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 GSKIPQ9P0R6 139 aa5.08□□□□□ -1.6
USP54-208ENST00000461520 RCL1Q9Y2P8 373 aaKnown RBP5.08□□□□□ -1.6
USP54-208ENST00000461520 HSPG2P98160 4391 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 CBY3A6NI87 242 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 L7N2F9 121 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 ATP5G1P05496 136 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 ATP5G3P48201 142 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 VAMP2P63027 116 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 ARL16Q0P5N6 197 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 C1orf134Q5TEV5 83 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 ZNF493Q6ZR52 646 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 TMEM263Q8WUH6 116 aaKnown RBP5.07□□□□□ -1.6
USP54-208ENST00000461520 TMEM37Q8WXS4 190 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 MGST2Q99735 147 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 ATG101Q9BSB4 218 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 C20orf85Q9H1P6 137 aa5.07□□□□□ -1.6
USP54-208ENST00000461520 TIMM8BQ9Y5J9 83 aaPredicted RBP5.07□□□□□ -1.6
USP54-208ENST00000461520 F5H768 121 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 H7BYZ3 331 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 LYRM1O43325 122 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 COX7A2P2O60397 106 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 HTN1P15515 57 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 CAMLGP49069 296 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 RAB31Q13636 194 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 ZNF846Q147U1 533 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 FCN2Q15485 313 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 C10orf113Q5VZT2 155 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 Q6ZRG5 221 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 RNASE8Q8TDE3 154 aaKnown RBP5.06□□□□□ -1.6
USP54-208ENST00000461520 DNAJC4Q9NNZ3 241 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 PAM16Q9Y3D7 125 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 PXMP4Q9Y6I8 212 aa5.06□□□□□ -1.6
USP54-208ENST00000461520 hDV102S1A0JD36 115 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 CCSO14618 274 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 PLA2G10O15496 165 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 TCRBP04435 133 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 SNRPCP09234 159 aaKnown RBP5.05□□□□□ -1.6
USP54-208ENST00000461520 IGLC2P0DOY2 106 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 PVALBP20472 110 aaPredicted RBP5.05□□□□□ -1.6
USP54-208ENST00000461520 BCAP31P51572 246 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 CAV2P51636 162 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 CCL18P55774 89 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 OPCMLQ14982 345 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 GUK1Q16774 197 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 NRARPQ7Z6K4 114 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 SMIM29Q86T20 159 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 OR1L4Q8NGR5 311 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 OR10J6PQ8NGY7 276 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 ZNRF2Q8NHG8 242 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 ZNF431Q8TF32 576 aaPredicted RBP5.05□□□□□ -1.6
USP54-208ENST00000461520 SAT2Q96F10 170 aaPredicted RBP5.05□□□□□ -1.6
USP54-208ENST00000461520 ODF3Q96PU9 254 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 PFDN5Q99471 154 aa5.05□□□□□ -1.6
USP54-208ENST00000461520 NOP10Q9NPE3 64 aaKnown RBP5.05□□□□□ -1.6
USP54-208ENST00000461520 LSM5Q9Y4Y9 91 aaKnown RBP5.05□□□□□ -1.6
USP54-208ENST00000461520 NBDYA0A0U1RRE5 68 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 C5orf51A6NDU8 294 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 FAM24AA6NFZ4 105 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 FAM25EA8MYX2 175 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 H3BQ15 152 aa5.04□□□□□ -1.6
USP54-208ENST00000461520 SLC17A3O00476 420 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms