RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 NIT1Q86X76 327 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 RPP21Q9H633 154 aaKnown RBP7.39□□□□□ -1.23
CUX1-206ENST00000437600 C21orf62Q9NYP8 219 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 CR1P17927 2039 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 IGHV7-81A0A0B4J1V7 117 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 HSBP1O75506 76 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 OR4F17Q8NGA8 305 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 SHANK2-AS3Q9BTD1 123 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 TRAV9-1A0A075B6T8 112 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 CENPVL3A0A0U1RRI6 287 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 A0A1B0GV72 72 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 ZNF324O75467 553 aaPredicted RBP7.38□□□□□ -1.23
CUX1-206ENST00000437600 CTSGP08311 255 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 TSPOP30536 169 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 CRYBA4P53673 196 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 SIGLEC15Q6ZMC9 328 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 TMEM75Q8N9X5 138 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 ZNF414Q96IQ9 312 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 HIF1ANQ9NWT6 349 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 SMPXQ9UHP9 88 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 NOTCH3Q9UM47 2321 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 TEP1Q99973 2627 aaKnown RBP7.38□□□□□ -1.23
CUX1-206ENST00000437600 IGLV11-55A0A075B6I3 123 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 NPIPB5A8MRT5 1133 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 HLA-DRB1P01911 266 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 ARMS2P0C7Q2 107 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 PLP1P60201 277 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 C15orf32Q32M92 178 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 AJUBAQ96IF1 538 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 PMCHL2Q9BQD1 86 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 PIMREGQ9BSJ6 248 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 C1RLQ9NZP8 487 aa7.38□□□□□ -1.23
CUX1-206ENST00000437600 M0R2Z0 102 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 NDUFA3O95167 84 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 MT-ND6P03923 174 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 IGHV4-38-2P0DP08 117 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 MFAP4P55083 255 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 EBLN2Q6P2I7 272 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 FAM231DQ6ZW35 169 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 Q86TA4 180 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 RNF182Q8N6D2 247 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 KLHDC1Q8N7A1 406 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 Q8N9W7 124 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 NPBQ8NG41 125 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 C10orf105Q8TEF2 133 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 FMC1Q96HJ9 113 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 URB1-AS1Q96HZ7 61 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 KCNS1Q96KK3 526 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 PRSS22Q9GZN4 317 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 PSG8Q9UQ74 426 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 C19orf71A6NCJ1 209 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 A8MWL6 223 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 ATP6V0E1O15342 81 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 APOHP02749 345 aaPredicted RBP7.37□□□□□ -1.23
CUX1-206ENST00000437600 PPIFP30405 207 aaKnown RBP7.37□□□□□ -1.23
CUX1-206ENST00000437600 UBE2E1P51965 193 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 LY6EQ16553 131 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 CCDC144NLQ6NUI1 221 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 CLEC19AQ6UXS0 136 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 LCNL1Q6ZST4 164 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 VGLL1Q99990 258 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 OTORQ9NRC9 128 aa7.37□□□□□ -1.23
CUX1-206ENST00000437600 TRAV26-1A0A087WT03 109 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 TRBV9A0A0B4J1U6 114 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 NPFFO15130 113 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 TCTAP57738 103 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 SPATA12Q7Z6I5 190 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 CST9LQ9H4G1 147 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 HIVEP1P15822 2718 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 H3BRN7 92 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 BRI3O95415 125 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 HBBP68871 147 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 ERCC8Q13216 396 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 OR10J3Q5JRS4 329 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 Q6ZQT7 251 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 BORCS7Q96B45 105 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 RNF5Q99942 180 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 SPXQ9BT56 116 aa7.36□□□□□ -1.23
CUX1-206ENST00000437600 IGKV3-7A0A075B6H7 116 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 LOC389332A0A1B0GUA5 103 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 CHEK1O14757 476 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 RHOGP84095 191 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 SMAD5-AS1Q9Y6J3 95 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 TMEM213A2RRL7 107 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 MRPS12O15235 138 aaKnown RBP7.35□□□□□ -1.23
CUX1-206ENST00000437600 AVPP01185 164 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 FAM106CPP0CH98 169 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 FAM106AQ4KMX7 169 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 PGPEP1Q9NXJ5 209 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 PRAC2D3DTV9 90 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 RNF223E7ERA6 249 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 DEFB1P60022 68 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 MINOS1Q5TGZ0 78 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 CITED1Q99966 193 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 MINOS1-NBL1R4GNA1 71 aa7.35□□□□□ -1.23
CUX1-206ENST00000437600 A0A1B0GXF2 115 aa7.34□□□□□ -1.23
CUX1-206ENST00000437600 WI2-2373I1.2A0A1W2PRP0 233 aa7.34□□□□□ -1.23
CUX1-206ENST00000437600 SPRY2O43597 315 aa7.34□□□□□ -1.23
CUX1-206ENST00000437600 ZNF80P51504 273 aaPredicted RBP7.34□□□□□ -1.23
CUX1-206ENST00000437600 PSG3Q16557 428 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms