RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 ZNF471Q9BX82 626 aaPredicted RBP13.4□□□□□ -0.26
SHH-202ENST00000430104 OTORQ9NRC9 128 aa13.4□□□□□ -0.26
SHH-202ENST00000430104 TRAV12-3A0A0B4J271 114 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 PFDN1O60925 122 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 CXorf1O96002 111 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 ZNF726P1Q15940 193 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 FAM74A1Q5RGS3 127 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 C9orf47Q6ZRZ4 202 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 TMUB2Q71RG4 321 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 TMEM256Q8N2U0 113 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 CMTM2Q8TAZ6 248 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 ODF3Q96PU9 254 aa13.39□□□□□ -0.27
SHH-202ENST00000430104 CTXND1A0A1B0GTU2 59 aa13.38□□□□□ -0.27
SHH-202ENST00000430104 SPART-AS1P0CW21 52 aa13.38□□□□□ -0.27
SHH-202ENST00000430104 AZU1P20160 251 aa13.38□□□□□ -0.27
SHH-202ENST00000430104 TCTE3Q8IZS6 198 aa13.38□□□□□ -0.27
SHH-202ENST00000430104 RXFP4Q8TDU9 374 aa13.38□□□□□ -0.27
SHH-202ENST00000430104 YTHDF2Q9Y5A9 579 aaKnown RBP13.38□□□□□ -0.27
SHH-202ENST00000430104 DIRC3C9JPN6 131 aa13.37□□□□□ -0.27
SHH-202ENST00000430104 RNASE4P34096 147 aaKnown RBP13.37□□□□□ -0.27
SHH-202ENST00000430104 C12orf74Q32Q52 190 aa13.37□□□□□ -0.27
SHH-202ENST00000430104 FAM222AQ5U5X8 452 aa13.37□□□□□ -0.27
SHH-202ENST00000430104 Q6ZTC4 211 aa13.37□□□□□ -0.27
SHH-202ENST00000430104 Q8TAT8 98 aa13.37□□□□□ -0.27
SHH-202ENST00000430104 PLA2G2EQ9NZK7 142 aa13.37□□□□□ -0.27
SHH-202ENST00000430104 KLK5Q9Y337 293 aaPredicted RBP13.37□□□□□ -0.27
SHH-202ENST00000430104 H7BYZ3 331 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 SLC25A5P05141 298 aaKnown RBP13.36□□□□□ -0.27
SHH-202ENST00000430104 GPX1P07203 203 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 ZNF138P52744 262 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 FGF8P55075 233 aaPredicted RBP13.36□□□□□ -0.27
SHH-202ENST00000430104 TAS2R60P59551 318 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 GNG5P63218 68 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 CD300CQ08708 224 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 BTN1A1Q13410 526 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 AKAP14Q86UN6 197 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 FAM19A4Q96LR4 140 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 C20orf144Q9BQM9 153 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 TMEM167BQ9NRX6 74 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 ZNF492Q9P255 531 aa13.36□□□□□ -0.27
SHH-202ENST00000430104 C7orf71A4D174 169 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 LGALSLQ3ZCW2 172 aaPredicted RBP13.35□□□□□ -0.27
SHH-202ENST00000430104 GOLT1AQ6ZVE7 132 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 NIPSNAP3BQ9BS92 247 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 TMPRSS5Q9H3S3 457 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 DKK2Q9UBU2 259 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 STARD9Q9P2P6 4700 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 CSMD3Q7Z407 3707 aa13.35□□□□□ -0.27
SHH-202ENST00000430104 RBAKDNA6NC62 111 aa13.34□□□□□ -0.27
SHH-202ENST00000430104 SUN5Q8TC36 379 aa13.34□□□□□ -0.27
SHH-202ENST00000430104 TRAV10A0A0B4J240 114 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 MAP1LC3B2A6NCE7 125 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 KLLNB2CW77 178 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 C11orf94C9JXX5 98 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 C1QBP02746 253 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 SEC11BP0C7V7 166 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 CRISP2P16562 243 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 FHITP49789 147 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 UBE2G2P60604 165 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 SUMO1P63165 101 aaKnown RBP13.33□□□□□ -0.28
SHH-202ENST00000430104 EIF5AP63241 154 aaKnown RBP13.33□□□□□ -0.28
SHH-202ENST00000430104 PRR9Q5T870 116 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 CCDC28AQ8IWP9 274 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 MAP1LC3BQ9GZQ8 125 aa13.33□□□□□ -0.28
SHH-202ENST00000430104 A0A1B0GVG6 124 aa13.32□□□□□ -0.28
SHH-202ENST00000430104 TPT1P13693 172 aaKnown RBP13.32□□□□□ -0.28
SHH-202ENST00000430104 ZFAND2AQ8N6M9 145 aa13.32□□□□□ -0.28
SHH-202ENST00000430104 FAM213BQ8TBF2 198 aa13.32□□□□□ -0.28
SHH-202ENST00000430104 C2CD4CQ8TF44 421 aa13.32□□□□□ -0.28
SHH-202ENST00000430104 C16orf74Q96GX8 76 aa13.32□□□□□ -0.28
SHH-202ENST00000430104 SGK494Q96LW2 274 aa13.32□□□□□ -0.28
SHH-202ENST00000430104 TENM2Q9NT68 2774 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 DEFB131BA0A096LNP1 70 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 LCE6AA0A183 80 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 TEX48A0A1B0GUV7 120 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 IGLL5B9A064 214 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 DAD1P61803 113 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 Q6ZQT7 251 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 C5orf17Q8NAS9 161 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 TMED6Q8WW62 240 aa13.31□□□□□ -0.28
SHH-202ENST00000430104 TRAV8-1A0A0A6YYK1 113 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 A0A1B0GV50 99 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 PLAC8L1A1L4L8 177 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 GGTLC3B5MD39 225 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 ZNF324O75467 553 aaPredicted RBP13.3□□□□□ -0.28
SHH-202ENST00000430104 NMBP08949 121 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 HTN3P15516 51 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 TMEM263Q8WUH6 116 aaKnown RBP13.3□□□□□ -0.28
SHH-202ENST00000430104 PYGO2Q9BRQ0 406 aa13.3□□□□□ -0.28
SHH-202ENST00000430104 UMAD1C9J7I0 102 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 TCRAP04437 139 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 DEFB130BP0DP73 79 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 DEFB130AP0DP74 79 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 ZNF493Q6ZR52 646 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 ARL6IP6Q8N6S5 226 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 STOML3Q8TAV4 291 aa13.29□□□□□ -0.28
SHH-202ENST00000430104 RNASE8Q8TDE3 154 aaKnown RBP13.29□□□□□ -0.28
SHH-202ENST00000430104 A0A1W2PRE2 83 aa13.28□□□□□ -0.28
SHH-202ENST00000430104 CBY3A6NI87 242 aa13.28□□□□□ -0.28
SHH-202ENST00000430104 LYRM9A8MSI8 78 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms