RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IGKV2-40A0A087WW87 121 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-206ENST00000409809 CCL21O00585 134 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 IGKV2D-40P01614 121 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-206ENST00000409809 ARMS2P0C7Q2 107 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 C15orf32Q32M92 178 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 PRSS29PA6NIE9 313 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 RNASE8Q8TDE3 154 aaKnown RBP10.49□□□□□ -0.73
COL6A3-206ENST00000409809 IGKV3-20P01619 116 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 PCOLCEQ15113 449 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 C14orf178Q8N769 122 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-206ENST00000409809 C17orf100A8MU93 164 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 H0YJW9 148 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 ZNF883P0CG24 379 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 PF4P02776 101 aa10.49□□□□□ -0.73
COL6A3-206ENST00000409809 FAM240AA0A1B0GVK7 77 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 ACACBO00763 2458 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 PSMB8P28062 276 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 RPL15P61313 204 aaKnown RBP10.48□□□□□ -0.73
COL6A3-206ENST00000409809 BMPERQ8N8U9 685 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 ATG2AQ2TAZ0 1938 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 IGLL5B9A064 214 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 NTF4P34130 210 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 MRPL51Q4U2R6 128 aaKnown RBP10.48□□□□□ -0.73
COL6A3-206ENST00000409809 NTN5Q8WTR8 489 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-206ENST00000409809 LENEPQ9Y5L5 61 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 WDR90Q96KV7 1748 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 C4orf51C9J302 202 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 LINC00643Q86TS7 51 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 SPACA3Q8IXA5 215 aa10.48□□□□□ -0.73
COL6A3-206ENST00000409809 MRPL35Q9NZE8 188 aaKnown RBP10.47□□□□□ -0.73
COL6A3-206ENST00000409809 TMEM219Q86XT9 240 aa10.47□□□□□ -0.73
COL6A3-206ENST00000409809 C1orf159Q96HA4 380 aa10.47□□□□□ -0.73
COL6A3-206ENST00000409809 DUX4L9Q6RFH8 374 aaPredicted RBP10.47□□□□□ -0.73
COL6A3-206ENST00000409809 BAALC-AS2P0C853 105 aa10.47□□□□□ -0.73
COL6A3-206ENST00000409809 ZNF747Q9BV97 191 aa10.47□□□□□ -0.73
COL6A3-206ENST00000409809 IGKV1D-8A0A087WSZ0 117 aa10.46□□□□□ -0.73
COL6A3-206ENST00000409809 K7ERJ3 54 aa10.46□□□□□ -0.73
COL6A3-206ENST00000409809 BRK1Q8WUW1 75 aa10.46□□□□□ -0.73
COL6A3-206ENST00000409809 RBAKDNA6NC62 111 aa10.46□□□□□ -0.73
COL6A3-206ENST00000409809 CFHR2P36980 270 aa10.46□□□□□ -0.73
COL6A3-206ENST00000409809 ZNF625Q96I27 306 aaPredicted RBP10.46□□□□□ -0.73
COL6A3-206ENST00000409809 SPINK2P20155 84 aa10.46□□□□□ -0.73
COL6A3-206ENST00000409809 TNRC6BQ9UPQ9 1833 aaKnown RBP10.46□□□□□ -0.74
COL6A3-206ENST00000409809 PIFOQ8TCI5 191 aa10.46□□□□□ -0.74
COL6A3-206ENST00000409809 LYZL4Q96KX0 146 aa10.46□□□□□ -0.74
COL6A3-206ENST00000409809 CR1LQ2VPA4 569 aa10.46□□□□□ -0.74
COL6A3-206ENST00000409809 C9JQL5 133 aa10.46□□□□□ -0.74
COL6A3-206ENST00000409809 WNT2P09544 360 aa10.46□□□□□ -0.74
COL6A3-206ENST00000409809 TRBV25-1A0A075B6N4 114 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 LYPD3O95274 346 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 MYO18BQ8IUG5 2567 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 M0R1W7 72 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 NDUFS7O75251 213 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 CCL3L1P16619 93 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 Q6ZUT4 128 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 THBDP07204 575 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 ANKRD39Q53RE8 183 aa10.45□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV3OR16-13A0A075B7E8 117 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV3-74A0A0B4J1X5 117 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 A0A0U1RRA0 63 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 ICOSQ9Y6W8 199 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 CSPG4Q6UVK1 2322 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 SLC22A18ASQ8N1D0 253 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 FAM208BQ5VWN6 2430 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 TRAV12-1A0A0B4J245 112 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 CCL4P13236 92 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 FOXF2Q12947 444 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 CCL19Q99731 98 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 NDUFC2-KCTD14E9PQ53 114 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 LTAP01374 205 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV3-66A0A0C4DH42 116 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 IGLV3-12A0A075B6K2 115 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 RNASE2P10153 161 aaKnown RBP10.44□□□□□ -0.74
COL6A3-206ENST00000409809 NKAPP1Q8N9T2 125 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 DAZ1Q9NQZ3 744 aaKnown RBP10.44□□□□□ -0.74
COL6A3-206ENST00000409809 LINC01565O15544 149 aa10.44□□□□□ -0.74
COL6A3-206ENST00000409809 FAM216BQ8N7L0 139 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 PRSS22Q9GZN4 317 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 SDHAF1A6NFY7 115 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 UBE2BP63146 152 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 PRSS57Q6UWY2 283 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 SVIPQ8NHG7 77 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 LINC00527Q9UJ94 153 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 PTH2Q96A98 100 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV3-49A0A0A0MS15 119 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 ZNF474Q6S9Z5 364 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-206ENST00000409809 TRBV19A0A075B6N1 114 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 MUSTN1Q8IVN3 82 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 C5orf64Q2M2E5 130 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 PLA2G2FQ9BZM2 168 aa10.43□□□□□ -0.74
COL6A3-206ENST00000409809 IGHV3-35A0A0C4DH35 117 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 AMTNQ6UX39 209 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 C10orf105Q8TEF2 133 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 CFHR4Q92496 578 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 IGKV1D-43A0A0B4J1Z2 117 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 ATP5J2P56134 94 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 RNF152Q8N8N0 203 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 PPIFP30405 207 aaKnown RBP10.42□□□□□ -0.74
COL6A3-206ENST00000409809 BSPH1Q075Z2 132 aa10.42□□□□□ -0.74
COL6A3-206ENST00000409809 TTC28Q96AY4 2481 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms