RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 Q8N1Y9 231 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 C2CD4CQ8TF44 421 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 LINC00477Q96M19 166 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 HLA-DRB4X5D2U9 266 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 MGAM2Q2M2H8 2515 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 NPIPB6E9PJ23 425 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 S100A9P06702 114 aaKnown RBP13.38□□□□□ -0.27
SDC1-203ENST00000403076 FLI1Q01543 452 aaPredicted RBP13.38□□□□□ -0.27
SDC1-203ENST00000403076 PRNTQ86SH4 94 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 TMEM75Q8N9X5 138 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 FMC1Q96HJ9 113 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 DERL1Q9BUN8 251 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 PSG8Q9UQ74 426 aa13.38□□□□□ -0.27
SDC1-203ENST00000403076 FBLL1A6NHQ2 334 aaKnown RBP13.37□□□□□ -0.27
SDC1-203ENST00000403076 H3BMM0 161 aa13.37□□□□□ -0.27
SDC1-203ENST00000403076 RPL35P42766 123 aaKnown RBP13.37□□□□□ -0.27
SDC1-203ENST00000403076 ZNF138P52744 262 aa13.37□□□□□ -0.27
SDC1-203ENST00000403076 TUBA4BQ9H853 241 aa13.37□□□□□ -0.27
SDC1-203ENST00000403076 SRD5A3Q9H8P0 318 aa13.37□□□□□ -0.27
SDC1-203ENST00000403076 TMEM183BQ1AE95 376 aa13.36□□□□□ -0.27
SDC1-203ENST00000403076 SLC7A5P1Q8MH63 180 aa13.36□□□□□ -0.27
SDC1-203ENST00000403076 Q8TAT8 98 aa13.36□□□□□ -0.27
SDC1-203ENST00000403076 CITED4Q96RK1 184 aa13.36□□□□□ -0.27
SDC1-203ENST00000403076 PARLQ9H300 379 aa13.36□□□□□ -0.27
SDC1-203ENST00000403076 KLF12Q9Y4X4 402 aa13.36□□□□□ -0.27
SDC1-203ENST00000403076 SFTA3P0C7M3 94 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 TAS2R60P59551 318 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 SOHLH1Q5JUK2 328 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 ASCL2Q99929 193 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 NDFIP1Q9BT67 221 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 ZNF492Q9P255 531 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 AGRNO00468 2067 aa13.35□□□□□ -0.27
SDC1-203ENST00000403076 ZNF727A8MUV8 499 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 IGLV2-11P01706 119 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 CT45A10P0DMU9 189 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 RPL35AP18077 110 aaKnown RBP13.34□□□□□ -0.27
SDC1-203ENST00000403076 SMIM7Q9BQ49 75 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 GNG4P50150 75 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 KPRPQ5T749 579 aaPredicted RBP13.34□□□□□ -0.27
SDC1-203ENST00000403076 Q86TA4 180 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 TRPT1Q86TN4 253 aaKnown RBP13.34□□□□□ -0.27
SDC1-203ENST00000403076 BAGE2Q86Y30 109 aa13.34□□□□□ -0.27
SDC1-203ENST00000403076 PRB2P02812 416 aaPredicted RBP13.33□□□□□ -0.28
SDC1-203ENST00000403076 SAPCD1Q5SSQ6 148 aa13.33□□□□□ -0.28
SDC1-203ENST00000403076 TRBV6-1A0A0K0K1D8 114 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 J3KRW8 73 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 TSPOP30536 169 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 LEPP41159 167 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 FXYD7P58549 80 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 NUTF2P61970 127 aaKnown RBP13.32□□□□□ -0.28
SDC1-203ENST00000403076 CENPWQ5EE01 88 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 ZFP30Q9Y2G7 519 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 LENEPQ9Y5L5 61 aa13.32□□□□□ -0.28
SDC1-203ENST00000403076 TMEM218A2RU14 115 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 LTAP01374 205 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 IGHV4-30-4P0DP06 118 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 FAM74A3Q4VXF1 159 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 AMTNQ6UX39 209 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 NHLRC2Q8NBF2 726 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 CLUHP3Q96NS8 147 aa13.31□□□□□ -0.28
SDC1-203ENST00000403076 RBMY1BA6NDE4 496 aaKnown RBP13.3□□□□□ -0.28
SDC1-203ENST00000403076 RBMY1EA6NEQ0 496 aaKnown RBP13.3□□□□□ -0.28
SDC1-203ENST00000403076 GPX1P07203 203 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 RBMY1DP0C7P1 496 aaKnown RBP13.3□□□□□ -0.28
SDC1-203ENST00000403076 SPINK13Q1W4C9 94 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 TVP23CQ96ET8 276 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 IGF2BP2-AS1Q96M15 143 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 C8orf49Q96NF6 230 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 ODF3Q96PU9 254 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 AURKAIP1Q9NWT8 199 aaPredicted RBP13.3□□□□□ -0.28
SDC1-203ENST00000403076 NOTCH1P46531 2555 aa13.3□□□□□ -0.28
SDC1-203ENST00000403076 LOC102724200A0A096LPH7 203 aaPredicted RBP13.29□□□□□ -0.28
SDC1-203ENST00000403076 A8MTW9 85 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 C9JCJ5 164 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 F8W036 122 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 M0R2Z0 102 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 MGST1P10620 155 aaKnown RBP13.29□□□□□ -0.28
SDC1-203ENST00000403076 TRBV20OR9-2A0A075B6H5 130 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 TRBV7-9A0A0J9YWB2 115 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 PGPEP1LA6NFU8 196 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 CDKN1BP46527 198 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 TMEM241Q24JQ0 296 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 SMUG1Q53HV7 270 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 MORN3Q6PF18 240 aaPredicted RBP13.29□□□□□ -0.28
SDC1-203ENST00000403076 TMEM183AQ8IXX5 376 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 NIPSNAP3BQ9BS92 247 aa13.29□□□□□ -0.28
SDC1-203ENST00000403076 RNASE4P34096 147 aaKnown RBP13.28□□□□□ -0.28
SDC1-203ENST00000403076 FAM19A4Q96LR4 140 aa13.28□□□□□ -0.28
SDC1-203ENST00000403076 TRAV12-2A0A075B6T6 113 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 AMBPP02760 352 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 CRISP2P16562 243 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 DEFB121Q5J5C9 76 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 ZFAND2AQ8N6M9 145 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 OCC1Q8TAD7 63 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 CSTL1Q9H114 145 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 XCL2Q9UBD3 114 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 NAT8Q9UHE5 227 aa13.27□□□□□ -0.29
SDC1-203ENST00000403076 CMYA5Q8N3K9 4069 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 GCGP01275 180 aa13.26□□□□□ -0.29
SDC1-203ENST00000403076 APOC4P55056 127 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms