RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TRGV1A0A0A0MS02 117 aa7.13□□□□□ -1.27
LIG3-202ENST00000378526 WIPF2Q8TF74 440 aaPredicted RBP7.13□□□□□ -1.27
LIG3-202ENST00000378526 C1orf162Q8NEQ5 155 aaPredicted RBP7.13□□□□□ -1.27
LIG3-202ENST00000378526 CRYGCP07315 174 aa7.13□□□□□ -1.27
LIG3-202ENST00000378526 DEFB103AP81534 67 aa7.13□□□□□ -1.27
LIG3-202ENST00000378526 SMIM26A0A096LP01 95 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 UCNP55089 124 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 ARMS2P0C7Q2 107 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 MRPL51Q4U2R6 128 aaKnown RBP7.12□□□□□ -1.27
LIG3-202ENST00000378526 LGALS9O00182 355 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 PRB2P02812 416 aaPredicted RBP7.12□□□□□ -1.27
LIG3-202ENST00000378526 LY6EQ16553 131 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 COA6Q5JTJ3 125 aaKnown RBP7.12□□□□□ -1.27
LIG3-202ENST00000378526 C16orf47Q6ZP98 133 aaPredicted RBP7.12□□□□□ -1.27
LIG3-202ENST00000378526 LYZL4Q96KX0 146 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 TTTY12Q9BZ98 90 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 C5orf64Q2M2E5 130 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 SMRP1Q8NCR6 262 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 CECR9P0C854 216 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 MST1P26927 711 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 ZFP36L2P47974 494 aaKnown RBP7.12□□□□□ -1.27
LIG3-202ENST00000378526 NDUFS7O75251 213 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 A0A0G2JMZ2 1700 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 LRRC37A2A6NM11 1700 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 LRRC37AA6NMS7 1700 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 NAV3Q8IVL0 2385 aa7.12□□□□□ -1.27
LIG3-202ENST00000378526 LCTP09848 1927 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 IGKV1D-16P01601 117 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 LRP5O75197 1615 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 LHFPL1Q86WI0 220 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 SRXN1Q9BYN0 137 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 MRPS18CQ9Y3D5 142 aaKnown RBP7.11□□□□□ -1.27
LIG3-202ENST00000378526 USP17L23D6RBM5 183 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 SERTAD4-AS1Q5TG53 156 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 ADAMTSL3P82987 1691 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 TEX22C9J3V5 150 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 IGHV3-73A0A0B4J1V6 119 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 HRKO00198 91 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 RMI2Q96E14 147 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 PRDM6Q9NQX0 595 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 C1QL2Q7Z5L3 287 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 LINC00479Q96M42 142 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 RNF5Q99942 180 aa7.11□□□□□ -1.27
LIG3-202ENST00000378526 LAIR2Q6ISS4 152 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 UBE2DNLQ8IWF7 75 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 TMEM61Q8N0U2 210 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 COLQQ9Y215 455 aaPredicted RBP7.1□□□□□ -1.27
LIG3-202ENST00000378526 DYNAPQ8N1N2 210 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 SERP2Q8N6R1 65 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 TMEM133Q9H2Q1 129 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 CRYBA2P53672 197 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 V9GYV3 84 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 CASC2Q6XLA1 102 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 REPIN1Q9BWE0 567 aaKnown RBP7.1□□□□□ -1.27
LIG3-202ENST00000378526 TM4SF4P48230 202 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 MDS2Q8NDY4 140 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 NEU4Q8WWR8 484 aaPredicted RBP7.1□□□□□ -1.27
LIG3-202ENST00000378526 M0QXV9 152 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 C20orf197Q8N268 126 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 PLAC1Q9HBJ0 212 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 S4R3C0 116 aa7.1□□□□□ -1.27
LIG3-202ENST00000378526 TRAV23DV6A0A075B6W5 121 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 SMIM9A6NGZ8 99 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 DEFB132Q7Z7B7 95 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 C3orf56Q8N813 242 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 USMG5Q96IX5 58 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 TANC1Q9C0D5 1861 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 IGHV1-45A0A0A0MS14 117 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 SLC25A45Q8N413 288 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 ETV2O00321 342 aaPredicted RBP7.09□□□□□ -1.27
LIG3-202ENST00000378526 CCL3L1P16619 93 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 Q6ZT83 130 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 SERP1Q9Y6X1 66 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 NDUFB8O95169 186 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 PRB1P04280 392 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 SHISA3A0PJX4 238 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 RSPO2Q6UXX9 243 aaPredicted RBP7.09□□□□□ -1.27
LIG3-202ENST00000378526 IGKV1D-13A0A0B4J2D9 117 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 IGHV1-69DA0A0B4J2H0 117 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 IGKV1-13P0DP09 117 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 ALPK3Q96L96 1907 aa7.09□□□□□ -1.27
LIG3-202ENST00000378526 TRAV4A0A0B4J268 109 aa7.09□□□□□ -1.28
LIG3-202ENST00000378526 A0A1B0GUS0 222 aa7.09□□□□□ -1.28
LIG3-202ENST00000378526 SDHAF1A6NFY7 115 aa7.09□□□□□ -1.28
LIG3-202ENST00000378526 FAM223BA6NKX1 122 aa7.09□□□□□ -1.28
LIG3-202ENST00000378526 WISP3O95389 354 aaPredicted RBP7.09□□□□□ -1.28
LIG3-202ENST00000378526 FAM223AQ8IWN6 122 aa7.09□□□□□ -1.28
LIG3-202ENST00000378526 C2orf16Q68DN1 1984 aa7.09□□□□□ -1.28
LIG3-202ENST00000378526 FAM60AQ9NP50 221 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 COX7B2Q8TF08 81 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 A0A087WWL8 130 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 C15orf32Q32M92 178 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 FOXE3Q13461 319 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 ZNF747Q9BV97 191 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 CCL21O00585 134 aa7.08□□□□□ -1.28
LIG3-202ENST00000378526 HOXB4P17483 251 aaPredicted RBP7.08□□□□□ -1.28
LIG3-202ENST00000378526 H0YJW9 148 aa7.07□□□□□ -1.28
LIG3-202ENST00000378526 BLCAPP62952 87 aa7.07□□□□□ -1.28
LIG3-202ENST00000378526 PIFOQ8TCI5 191 aa7.07□□□□□ -1.28
LIG3-202ENST00000378526 YPEL4Q96NS1 127 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms