RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 CBY1Q9Y3M2 126 aa11.04□□□□□ -0.64
CD48-201ENST00000368045 CENPVL3A0A0U1RRI6 287 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 CLPSL1A2RUU4 121 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 NPFFO15130 113 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 LMO4P61968 165 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 NHLH1Q02575 133 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 IGFL4Q6B9Z1 124 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 C2orf91Q6ZV80 131 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 METTL26Q96S19 204 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 NXT2Q9NPJ8 142 aaKnown RBP11.03□□□□□ -0.64
CD48-201ENST00000368045 TP73-AS1Q9UF72 201 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 ABCA4P78363 2273 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 PTPRZ1P23471 2315 aaPredicted RBP11.03□□□□□ -0.64
CD48-201ENST00000368045 MUC21A0A0G2JKD1 596 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 MUC21A0A140T8X8 626 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 A0A1W2PPR1 153 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 K7EP13 123 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 SEC11AP67812 179 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 ERCC8Q13216 396 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 MUC21Q5SSG8 566 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 U3KQE9 123 aa11.03□□□□□ -0.64
CD48-201ENST00000368045 KALRNO60229 2985 aa11.02□□□□□ -0.64
CD48-201ENST00000368045 CEP295Q9C0D2 2601 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 IGHV3-35A0A0C4DH35 117 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 PRAC2D3DTV9 90 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 FGF6P10767 208 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 VAMP3Q15836 100 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 CLEC19AQ6UXS0 136 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 Q6ZVH6 145 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 PIP4P2Q8N4L2 257 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 UBTD1Q9HAC8 227 aa11.02□□□□□ -0.65
CD48-201ENST00000368045 IGHV3OR16-8A0A075B7F1 116 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 SMKR1H3BMG3 65 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 SIVA1O15304 175 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 NDUFS7O75251 213 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 SFTPCP11686 197 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 CRIP2P52943 208 aaPredicted RBP11.01□□□□□ -0.65
CD48-201ENST00000368045 CACNG7P62955 275 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 TMEM78Q5T7P6 136 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 C5orf56Q8N8D9 126 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 OR9G4Q8NGQ1 327 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 SPTBN2O15020 2390 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 SPTA1P02549 2419 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 ARHGAP32A7KAX9 2087 aa11.01□□□□□ -0.65
CD48-201ENST00000368045 FAM223BA6NKX1 122 aa11□□□□□ -0.65
CD48-201ENST00000368045 FCER1GP30273 86 aa11□□□□□ -0.65
CD48-201ENST00000368045 ATP5G2Q06055 141 aa11□□□□□ -0.65
CD48-201ENST00000368045 ANKRD39Q53RE8 183 aa11□□□□□ -0.65
CD48-201ENST00000368045 IL17RELQ6ZVW7 336 aa11□□□□□ -0.65
CD48-201ENST00000368045 FAM223AQ8IWN6 122 aa11□□□□□ -0.65
CD48-201ENST00000368045 BOD1L2Q8IYS8 172 aa11□□□□□ -0.65
CD48-201ENST00000368045 PIFOQ8TCI5 191 aa11□□□□□ -0.65
CD48-201ENST00000368045 AGPAT4-IT1Q9H0P7 198 aa11□□□□□ -0.65
CD48-201ENST00000368045 TMEM97Q5BJF2 176 aa11□□□□□ -0.65
CD48-201ENST00000368045 PRSS57Q6UWY2 283 aa11□□□□□ -0.65
CD48-201ENST00000368045 C9orf47Q6ZRZ4 202 aa11□□□□□ -0.65
CD48-201ENST00000368045 RNF182Q8N6D2 247 aa11□□□□□ -0.65
CD48-201ENST00000368045 OR4C5Q8NGB2 326 aa11□□□□□ -0.65
CD48-201ENST00000368045 MSRB1Q9NZV6 116 aa11□□□□□ -0.65
CD48-201ENST00000368045 TRAV8-2A0A0B4J237 113 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 G3V318 75 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 SMAD7O15105 426 aaKnown RBP10.99□□□□□ -0.65
CD48-201ENST00000368045 ZZEF1O43149 2961 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 TNFRSF6BO95407 300 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 C8orf86Q6ZUL3 223 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 SMIM15Q7Z3B0 74 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 DMXL2Q8TDJ6 3036 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 BPESC1Q9GZL8 116 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 MOB4Q9Y3A3 225 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 LENEPQ9Y5L5 61 aa10.99□□□□□ -0.65
CD48-201ENST00000368045 PRSS47A8MTI9 375 aa10.98□□□□□ -0.65
CD48-201ENST00000368045 C19orf54Q5BKX5 351 aa10.98□□□□□ -0.65
CD48-201ENST00000368045 OR4X2Q8NGF9 303 aa10.98□□□□□ -0.65
CD48-201ENST00000368045 COL25A1Q9BXS0 654 aaPredicted RBP10.98□□□□□ -0.65
CD48-201ENST00000368045 PEF1Q9UBV8 284 aaKnown RBP10.98□□□□□ -0.65
CD48-201ENST00000368045 IGHV4-4A0A075B6R2 117 aa10.98□□□□□ -0.65
CD48-201ENST00000368045 IGKV3D-20A0A0C4DH25 116 aa10.98□□□□□ -0.65
CD48-201ENST00000368045 Q8N8P6 123 aa10.98□□□□□ -0.65
CD48-201ENST00000368045 TRAV41A0A0B4J266 112 aa10.97□□□□□ -0.65
CD48-201ENST00000368045 HSD52Q0P140 79 aa10.97□□□□□ -0.65
CD48-201ENST00000368045 C9orf139Q6ZV77 190 aa10.97□□□□□ -0.65
CD48-201ENST00000368045 SMPXQ9UHP9 88 aa10.97□□□□□ -0.65
CD48-201ENST00000368045 IGHV3-66A0A0C4DH42 116 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 A1L4Q6 167 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 A6NDN8 102 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 LINC01548A6NM66 108 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 LEPP41159 167 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 ZMAT4Q9H898 229 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 C11orf21Q9P2W6 132 aa10.96□□□□□ -0.65
CD48-201ENST00000368045 CBY3A6NI87 242 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 SNAI2O43623 268 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 ATP5LO75964 103 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 BRI3O95415 125 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 OR2K2Q8NGT1 345 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 GLMPQ8WWB7 406 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 C7orf71A4D174 169 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 FXYD7P58549 80 aa10.95□□□□□ -0.66
CD48-201ENST00000368045 ITLN2Q8WWU7 325 aaPredicted RBP10.95□□□□□ -0.66
CD48-201ENST00000368045 IGLV2-18A0A075B6J9 118 aa10.94□□□□□ -0.66
CD48-201ENST00000368045 IGHV1-69DA0A0B4J2H0 117 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms