RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 TMEM200BQ69YZ2 307 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 TINCRA0A1B0GVN0 87 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 LYL1P12980 280 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 HGFACQ04756 655 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 SDHAF1A6NFY7 115 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 CFHR2P36980 270 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 MED12LQ86YW9 2145 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 FREM1Q5H8C1 2179 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 C20orf204Q6ZNR8 217 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 NPSP0C0P6 89 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 ZNF883P0CG24 379 aa7.56□□□□□ -1.2
VPS13A-203ENST00000360280 SP7Q8TDD2 431 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-203ENST00000360280 IGHV1-18A0A0C4DH31 117 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.55□□□□□ -1.29e-7■■■■■ 31.2
VPS13A-203ENST00000360280 IGLV3-32A0A0A0MS00 114 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 SHANK2-AS3Q9BTD1 123 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 DAD1P61803 113 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 HS3ST6Q96QI5 342 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 TRBV6-6A0A0A6YYG2 114 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 CRYGCP07315 174 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 PRSS57Q6UWY2 283 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 MSRB2Q9Y3D2 182 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 PLXNB1O43157 2135 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 C22orf46C9J442 243 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 RHPN1-AS1Q9BWJ2 59 aa7.55□□□□□ -1.2
VPS13A-203ENST00000360280 NPYP01303 97 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 RSPO4Q2I0M5 234 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-203ENST00000360280 ATP1A1-AS1Q5TC04 95 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 C11orf44Q8N8P7 122 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 LYZL4Q96KX0 146 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 CGB3P0DN86 165 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 C14orf132Q9NPU4 83 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 NDUFB1O75438 58 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 SIGLEC9Q9Y336 463 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 APOC4P55056 127 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 ZNF837Q96EG3 531 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-203ENST00000360280 PRSS29PA6NIE9 313 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 NTF4P34130 210 aa7.54□□□□□ -1.2
VPS13A-203ENST00000360280 J3QQQ9 107 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 IGKV1-5P01602 117 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 PIP4P2Q8N4L2 257 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 E9PLN8 166 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 DEFB121Q5J5C9 76 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 Q6ZS49 121 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 TANC1Q9C0D5 1861 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 NTN3O00634 580 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-203ENST00000360280 IGHV1-46P01743 117 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 VWC2Q2TAL6 325 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 C9orf106Q8NAJ2 232 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 FOXF2Q12947 444 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 MRPL51Q4U2R6 128 aaKnown RBP7.53□□□□□ -1.2
VPS13A-203ENST00000360280 DKK1O94907 266 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 PSMB8P28062 276 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 A0A1B0GX51 115 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 ANXA2RQ3ZCQ2 193 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 CGB7P0DN87 165 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 ZCCHC24Q8N2G6 241 aaKnown RBP7.53□□□□□ -1.2
VPS13A-203ENST00000360280 B4DSR2 109 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 UBE2E2Q96LR5 201 aa7.53□□□□□ -1.2
VPS13A-203ENST00000360280 K7ERJ3 54 aa7.52□□□□□ -1.2
VPS13A-203ENST00000360280 MRPL35Q9NZE8 188 aaKnown RBP7.52□□□□□ -1.2
VPS13A-203ENST00000360280 BRK1Q8WUW1 75 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 MCRIP2Q9BUT9 160 aaKnown RBP7.52□□□□□ -1.21
VPS13A-203ENST00000360280 SMIM27A0A1W2PRY6 76 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 H3BUX3 64 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-203ENST00000360280 F5H768 121 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 IGFBPL1Q8WX77 278 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 C20orf78Q9BR46 151 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 UBE2BP63146 152 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 EFNA4P52798 201 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 PRR31Q5SQ13 230 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 FAM236AA0A1B0GUQ0 79 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 FAM236BA0A1B0GV22 79 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 PRB4P10163 310 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-203ENST00000360280 ZNF493Q6ZR52 646 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 TMEM178BH3BS89 294 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 MDS2Q8NDY4 140 aa7.52□□□□□ -1.21
VPS13A-203ENST00000360280 HERV-K104P63124 156 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 PYGO2Q9BRQ0 406 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 PRSS47A8MTI9 375 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 BAALC-AS2P0C853 105 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 C10orf55Q5SWW7 151 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 Q6ZWC4 215 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 CSRP3P50461 194 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 SLC25A29Q8N8R3 303 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 MRPL55Q7Z7F7 128 aaKnown RBP7.51□□□□□ -1.21
VPS13A-203ENST00000360280 LINC00527Q9UJ94 153 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 ATP5G1P05496 136 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 ZNF134P52741 427 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 PROP1O75360 226 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 C15orf62A8K5M9 175 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 GVINP1Q7Z2Y8 2422 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 C8orf49Q96NF6 230 aa7.51□□□□□ -1.21
VPS13A-203ENST00000360280 IGKV1D-8A0A087WSZ0 117 aa7.5□□□□□ -1.21
VPS13A-203ENST00000360280 CRYGSP22914 178 aa7.5□□□□□ -1.21
VPS13A-203ENST00000360280 MUSTN1Q8IVN3 82 aa7.5□□□□□ -1.21
VPS13A-203ENST00000360280 TMEM213A2RRL7 107 aa7.5□□□□□ -1.21
VPS13A-203ENST00000360280 FAM231DQ6ZW35 169 aa7.5□□□□□ -1.21
VPS13A-203ENST00000360280 GFI1Q99684 422 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms