RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MUC3AQ02505 3323 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 TEX48A0A1B0GUV7 120 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 IGFBPL1Q8WX77 278 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 LINC01545Q5VT33 79 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 PATE3B3GLJ2 98 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 TEX22C9J3V5 150 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 LYZL1Q6UWQ5 148 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 C5orf63A6NC05 138 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 B9A039 149 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 PSCAO43653 123 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 ZNF837Q96EG3 531 aaPredicted RBP5.18□□□□□ -1.58
VPS35-201ENST00000299138 LINC00527Q9UJ94 153 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 IGKV2-40A0A087WW87 121 aaPredicted RBP5.18□□□□□ -1.58
VPS35-201ENST00000299138 NBR2O15453 112 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 PROP1O75360 226 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 NXPH4O95158 308 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 IGKV2D-40P01614 121 aaPredicted RBP5.18□□□□□ -1.58
VPS35-201ENST00000299138 A0A1B0GXF2 115 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 F2Z2F3 143 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 CRYGCP07315 174 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 BAALC-AS2P0C853 105 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 CDPF1Q6NVV7 123 aa5.18□□□□□ -1.58
VPS35-201ENST00000299138 ZCCHC24Q8N2G6 241 aaKnown RBP5.18□□□□□ -1.58
VPS35-201ENST00000299138 RNASE8Q8TDE3 154 aaKnown RBP5.18□□□□□ -1.58
VPS35-201ENST00000299138 LAMA2P24043 3122 aaKnown RBP5.18□□□□□ -1.58
VPS35-201ENST00000299138 NTF4P34130 210 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 RBX1P62877 108 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 IGF2BP2-AS1Q96M15 143 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 ZNF71Q9NQZ8 489 aaPredicted RBP5.17□□□□□ -1.58
VPS35-201ENST00000299138 RFNGQ9Y644 331 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 TRBV19A0A075B6N1 114 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 C15orf65H3BRN8 121 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 VPREB1P12018 145 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 UBE2E1P51965 193 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 NUP35Q8NFH5 326 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 PRO1854Q9UHT4 67 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 ADAMTS9Q9P2N4 1935 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 PSG7Q13046 419 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 HEATR5AQ86XA9 2040 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 IGHV1-24A0A0C4DH33 117 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 M0R1W7 72 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 SMIM2Q9BVW6 85 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 FANCMQ8IYD8 2048 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 KLK10O43240 276 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 DTX2Q86UW9 622 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 ITLN1Q8WWA0 313 aa5.17□□□□□ -1.58
VPS35-201ENST00000299138 KNL1Q8NG31 2342 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 IGHV4-4A0A075B6R2 117 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 IGLV2-14P01704 120 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 IGHV3-11P01762 117 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 CD24P25063 80 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 C20orf173Q96LM9 149 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 TP53BP1Q12888 1972 aaPredicted RBP5.16□□□□□ -1.58
VPS35-201ENST00000299138 UBE2DNLQ8IWF7 75 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 LRRK1Q38SD2 2015 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 NDUFC2-KCTD14E9PQ53 114 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 LINC01619G3V211 115 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 C8orf86Q6ZUL3 223 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 NEGR1Q7Z3B1 354 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 NKAPP1Q8N9T2 125 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 OOSP1A8MZH6 123 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 K7ERS5 55 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 TMEM75Q8N9X5 138 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 A0A0B4J2C4 111 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 C20orf204Q6ZNR8 217 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 TMEM219Q86XT9 240 aa5.16□□□□□ -1.58
VPS35-201ENST00000299138 C2orf70A6NJV1 201 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 FSTL3O95633 263 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 RCHY1Q96PM5 261 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 PRSS22Q9GZN4 317 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 VCYO14598 125 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 CCL4P13236 92 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 LOXL1Q08397 574 aaPredicted RBP5.15□□□□□ -1.58
VPS35-201ENST00000299138 Q6ZPA2 131 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 C10orf105Q8TEF2 133 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 ALPK2Q86TB3 2170 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 IGHV4OR15-8A0A075B7B6 117 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 A0A087WW49 117 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 IGLV1-44P01699 117 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 IGLL1P15814 213 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 NDUFV3P56181 108 aaKnown RBP5.15□□□□□ -1.58
VPS35-201ENST00000299138 C14orf178Q8N769 122 aaPredicted RBP5.15□□□□□ -1.58
VPS35-201ENST00000299138 LY6G5BQ8NDX9 201 aa5.15□□□□□ -1.58
VPS35-201ENST00000299138 NOTCH4Q99466 2003 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 PLXND1Q9Y4D7 1925 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 A0A087WWL8 130 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 LHBP01229 141 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 ZNF493Q6ZR52 646 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 SIGLEC9Q9Y336 463 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 SHANK1Q9Y566 2161 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 LINC00473A8K010 186 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 PSPNO60542 156 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 LTAP01374 205 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 DAZAP2Q15038 168 aaPredicted RBP5.15□□□□□ -1.59
VPS35-201ENST00000299138 SS18Q15532 418 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 C12orf74Q32Q52 190 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 UNQ6494/PRO21346Q6UXR6 183 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 ZNF329Q86UD4 541 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 RNF152Q8N8N0 203 aa5.15□□□□□ -1.59
VPS35-201ENST00000299138 ATP6V0E2Q8NHE4 81 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms