RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 IL15RAQ13261 267 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 ASAH1Q13510 395 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 Q6ZRG5 221 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 TMEM37Q8WXS4 190 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 SLC50A1Q9BRV3 221 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 DNAJC4Q9NNZ3 241 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 LYRM2Q9NU23 88 aaPredicted RBP11.37□□□□□ -0.59
CLN3-264ENST00000637985 UQCC1Q9NVA1 299 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 YTHDF2Q9Y5A9 579 aaKnown RBP11.37□□□□□ -0.59
CLN3-264ENST00000637985 FAM24AA6NFZ4 105 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 BOLA2-SMG1P6H3BVE0 249 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 S100A11P31949 105 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 SULT1A1P50225 295 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 RHOBP62745 196 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 HIST1H1AQ02539 215 aaPredicted RBP11.36□□□□□ -0.59
CLN3-264ENST00000637985 VWC2Q2TAL6 325 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 C10orf113Q5VZT2 155 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 NRARPQ7Z6K4 114 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 ZNF331Q9NQX6 463 aaPredicted RBP11.36□□□□□ -0.59
CLN3-264ENST00000637985 PPP1R14DQ9NXH3 145 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 PGPEP1Q9NXJ5 209 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 WDR83OSQ9Y284 106 aa11.36□□□□□ -0.59
CLN3-264ENST00000637985 TSPOP30536 169 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 S100A10P60903 97 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 HBG1P69891 147 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 HBG2P69892 147 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 RAB32Q13637 225 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 STX12Q86Y82 276 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 TMEM256Q8N2U0 113 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 OR1L4Q8NGR5 311 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 RPUSD4Q96CM3 377 aaKnown RBP11.35□□□□□ -0.59
CLN3-264ENST00000637985 Q9H8V8 135 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 PTTG2Q9NZH5 202 aa11.35□□□□□ -0.59
CLN3-264ENST00000637985 LYRM9A8MSI8 78 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 NUDT3O95989 172 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 OPCMLQ14982 345 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 TTC32Q5I0X7 151 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 BAP18Q8IXM2 172 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 TMEM252Q8N6L7 170 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 CHAC2Q8WUX2 184 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 PFDN5Q99471 154 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 PXMP4Q9Y6I8 212 aa11.34□□□□□ -0.59
CLN3-264ENST00000637985 TRAV12-2A0A075B6T6 113 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 ZNF705GA8MUZ8 300 aaPredicted RBP11.33□□□□□ -0.6
CLN3-264ENST00000637985 SMR3BP02814 79 aaPredicted RBP11.33□□□□□ -0.6
CLN3-264ENST00000637985 IGLC2P0DOY2 106 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 RPL29P47914 159 aaKnown RBP11.33□□□□□ -0.6
CLN3-264ENST00000637985 GUK1Q16774 197 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 ATP6V1FQ16864 119 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 MORN5Q5VZ52 161 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 MIC13Q5XKP0 118 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 Q9H3A6 140 aa11.33□□□□□ -0.6
CLN3-264ENST00000637985 GPN1Q9HCN4 374 aaPredicted RBP11.33□□□□□ -0.6
CLN3-264ENST00000637985 IGSF23A1L1A6 192 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 UPK1BO75841 260 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 FUSP35637 526 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLN3-264ENST00000637985 CDKN1BP46527 198 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 BAXQ07812 192 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 SERTAD4-AS1Q5TG53 156 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 SSX7Q7RTT5 188 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 ENKURQ8TC29 256 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 SAT2Q96F10 170 aaPredicted RBP11.32□□□□□ -0.6
CLN3-264ENST00000637985 ZNF503Q96F45 646 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 LINC01587Q99440 93 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 SLC39A9Q9NUM3 307 aa11.32□□□□□ -0.6
CLN3-264ENST00000637985 UBE2L5PA0A1B0GUS4 154 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 MPDU1O75352 247 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 PRM2P04554 102 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 SNRPCP09234 159 aaKnown RBP11.31□□□□□ -0.6
CLN3-264ENST00000637985 TAS2R60P59551 318 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 CDPF1Q6NVV7 123 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 OR10J6PQ8NGY7 276 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 C20orf144Q9BQM9 153 aa11.31□□□□□ -0.6
CLN3-264ENST00000637985 A0A1W2PPQ1 181 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 A6NHS1 94 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 H3BQ15 152 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 FAM229AH3BQW9 127 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 SLC17A3O00476 420 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 RLN2P04090 185 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 Q6ZSN1 163 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 NMES1Q9C002 83 aa11.3□□□□□ -0.6
CLN3-264ENST00000637985 TRAV5A0A0B4J249 113 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 PLAC8L1A1L4L8 177 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 PRAF2O60831 178 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 ZNF253O75346 499 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 AZU1P20160 251 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 FGF7P21781 194 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 KRTAP10-1P60331 282 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 ZNF493Q6ZR52 646 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 C16orf74Q96GX8 76 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 SLC25A31Q9H0C2 315 aa11.29□□□□□ -0.6
CLN3-264ENST00000637985 KRTAP29-1A8MX34 341 aaPredicted RBP11.28□□□□□ -0.6
CLN3-264ENST00000637985 PRAC2D3DTV9 90 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 E5RGE8 158 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 F5H768 121 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 H3BTX0 84 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 H7BYZ3 331 aa11.28□□□□□ -0.6
CLN3-264ENST00000637985 CYCSP99999 105 aaKnown RBP11.28□□□□□ -0.6
CLN3-264ENST00000637985 Q6ZRN7 208 aaPredicted RBP11.28□□□□□ -0.6
CLN3-264ENST00000637985 RNF141Q8WVD5 230 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms