RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TMEM78Q5T7P6 136 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 TMEM75Q8N9X5 138 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 SHANK2-AS3Q9BTD1 123 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 A0A1B0GXF2 115 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 ARL6IP6Q8N6S5 226 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 NDUFA3O95167 84 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 GOSR1O95249 250 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 SRSF9Q13242 221 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIG1-221ENST00000613670 NEU4Q8WWR8 484 aaPredicted RBP10.01□□□□□ -0.81
LIG1-221ENST00000613670 LOC105371242A0A075B767 164 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 FAM106CPP0CH98 169 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 RPS20P60866 119 aaKnown RBP10.01□□□□□ -0.81
LIG1-221ENST00000613670 FAM106AQ4KMX7 169 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 ZNF502Q8TBZ5 544 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 DEFB104AQ8WTQ1 72 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 ARHGAP32A7KAX9 2087 aa10□□□□□ -0.81
LIG1-221ENST00000613670 SMAD7O15105 426 aaKnown RBP10□□□□□ -0.81
LIG1-221ENST00000613670 RBX1P62877 108 aa10□□□□□ -0.81
LIG1-221ENST00000613670 FOXC1Q12948 553 aa10□□□□□ -0.81
LIG1-221ENST00000613670 PRSS33Q8NF86 280 aa10□□□□□ -0.81
LIG1-221ENST00000613670 ARPC1AQ92747 370 aa10□□□□□ -0.81
LIG1-221ENST00000613670 F5H697 171 aa10□□□□□ -0.81
LIG1-221ENST00000613670 SAMD5Q5TGI4 173 aa10□□□□□ -0.81
LIG1-221ENST00000613670 RUSC1-AS1Q66K80 236 aa10□□□□□ -0.81
LIG1-221ENST00000613670 PCP2Q8IVA1 136 aa10□□□□□ -0.81
LIG1-221ENST00000613670 B9A039 149 aa10□□□□□ -0.81
LIG1-221ENST00000613670 LOXL1Q08397 574 aaPredicted RBP10□□□□□ -0.81
LIG1-221ENST00000613670 MRPL51Q4U2R6 128 aaKnown RBP10□□□□□ -0.81
LIG1-221ENST00000613670 FAM104BQ5XKR9 115 aa10□□□□□ -0.81
LIG1-221ENST00000613670 OR4X2Q8NGF9 303 aa10□□□□□ -0.81
LIG1-221ENST00000613670 SCRT2Q9NQ03 307 aa10□□□□□ -0.81
LIG1-221ENST00000613670 KLF12Q9Y4X4 402 aa10□□□□□ -0.81
LIG1-221ENST00000613670 FABP5P3A8MUU1 101 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 M0R381 172 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 NUP37Q8NFH4 326 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 TTTY13Q9BZ97 58 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 DKK2Q9UBU2 259 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 LOC107984156A0A0G2JMH3 177 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 NPYP01303 97 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 IGKV1-17P01599 117 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 IGLV2-23P01705 113 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 ARL17AQ8IVW1 177 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 ATRXP46100 2492 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 E7EQL1 145 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 HLA-DMBP28068 263 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 ERCC8Q13216 396 aa9.99□□□□□ -0.81
LIG1-221ENST00000613670 CUL9Q8IWT3 2517 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 PSMB11A5LHX3 300 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 C19orf71A6NCJ1 209 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 ZC2HC1BQ5TFG8 222 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 PLA2G2CQ5R387 149 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 Q6ZS92 163 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 MTURNQ8N3F0 131 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 OR9G4Q8NGQ1 327 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 MLST8Q9BVC4 326 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 DSCAML1Q8TD84 2053 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 K7EP13 123 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 Q71RC1 249 aaPredicted RBP9.98□□□□□ -0.81
LIG1-221ENST00000613670 URB1-AS1Q96HZ7 61 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 C16orf92Q96LL3 132 aa9.98□□□□□ -0.81
LIG1-221ENST00000613670 K7EMI3 77 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 SCGB1C2P0DMR2 95 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 CCDC144NLQ6NUI1 221 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 PRSS22Q9GZN4 317 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 C1RLQ9NZP8 487 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 LINC01545Q5VT33 79 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 CLEC19AQ6UXS0 136 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 ZNF491Q8N8L2 437 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 CCL21O00585 134 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 SMAGPQ0VAQ4 97 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 FAM71F2Q6NXP2 309 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 LINC00311Q8N616 119 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 TMEM158Q8WZ71 300 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 MSRB1Q9NZV6 116 aa9.97□□□□□ -0.81
LIG1-221ENST00000613670 IGKCP01834 107 aa9.96□□□□□ -0.81
LIG1-221ENST00000613670 SMIM17P0DL12 118 aa9.96□□□□□ -0.81
LIG1-221ENST00000613670 DLX6P56179 175 aa9.96□□□□□ -0.81
LIG1-221ENST00000613670 LCNL1Q6ZST4 164 aa9.96□□□□□ -0.81
LIG1-221ENST00000613670 TNFRSF14Q92956 283 aa9.96□□□□□ -0.81
LIG1-221ENST00000613670 C9orf118A6NHY6 69 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 K7ERJ3 54 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 TTC9CQ8N5M4 171 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 IGHV3OR16-10A0A075B7F0 116 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 OR11H12B2RN74 326 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 ZNF672Q499Z4 452 aaPredicted RBP9.96□□□□□ -0.82
LIG1-221ENST00000613670 RNF182Q8N6D2 247 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 OR11H1Q8NG94 326 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 OR11H2Q8NH07 326 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 VGLL1Q99990 258 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 GTSF1LQ9H1H1 148 aa9.96□□□□□ -0.82
LIG1-221ENST00000613670 DPM2O94777 84 aa9.95□□□□□ -0.82
LIG1-221ENST00000613670 DOPEY2Q9Y3R5 2298 aa9.95□□□□□ -0.82
LIG1-221ENST00000613670 GATA1P15976 413 aaPredicted RBP9.95□□□□□ -0.82
LIG1-221ENST00000613670 SIGLEC15Q6ZMC9 328 aa9.95□□□□□ -0.82
LIG1-221ENST00000613670 OR1N2Q8NGR9 330 aa9.95□□□□□ -0.82
LIG1-221ENST00000613670 LINC00527Q9UJ94 153 aa9.95□□□□□ -0.82
LIG1-221ENST00000613670 PRR30Q53SZ7 412 aaPredicted RBP9.95□□□□□ -0.82
LIG1-221ENST00000613670 TMEM14CQ9P0S9 112 aa9.95□□□□□ -0.82
LIG1-221ENST00000613670 H3BRM9 83 aa9.94□□□□□ -0.82
LIG1-221ENST00000613670 H3BRN7 92 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms