RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 MGST2Q99735 147 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 PYGO2Q9BRQ0 406 aa8.21□□□□□ -1.1
LIG3-209ENST00000586435 PARD6GQ9BYG4 376 aaPredicted RBP8.21□□□□□ -1.1
LIG3-209ENST00000586435 A0A0J9YY99 117 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 GAGE12BA1L429 117 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 NPIPB6E9PJ23 425 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 GAGE7O76087 117 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 SCGB1D2O95969 90 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 GAGE12FP0CL80 117 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 GAGE12GP0CL81 117 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 GAGE12IP0CL82 117 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 LEPP41159 167 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 ARL16Q0P5N6 197 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 OPCMLQ14982 345 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 GUK1Q16774 197 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 SPANXN2Q5MJ10 180 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 MORN5Q5VZ52 161 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 C10orf113Q5VZT2 155 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 FLVCR2Q9UPI3 526 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 DNAH5Q8TE73 4624 aa8.2□□□□□ -1.1
LIG3-209ENST00000586435 C7orf66A4D0T2 115 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 H3BQ15 152 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 ZNF253O75346 499 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 SNRPCP09234 159 aaKnown RBP8.19□□□□□ -1.1
LIG3-209ENST00000586435 BTCP35070 178 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 INPP1P49441 399 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 KRTAP10-2P60368 255 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 TRIQKQ629K1 86 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 MITD1Q8WV92 249 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 MRPL53Q96EL3 112 aaKnown RBP8.19□□□□□ -1.1
LIG3-209ENST00000586435 TMPRSS5Q9H3S3 457 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 SCRT2Q9NQ03 307 aa8.19□□□□□ -1.1
LIG3-209ENST00000586435 TRAV12-3A0A0B4J271 114 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 LINC00854A0A1B0GVQ3 168 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 H3BTX0 84 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 MBPP02686 304 aaPredicted RBP8.18□□□□□ -1.1
LIG3-209ENST00000586435 CT45A10P0DMU9 189 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 CAMLGP49069 296 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 BAK1Q16611 211 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 CNPY1Q3B7I2 92 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 Q6ZRG5 221 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 Q6ZTI0 123 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 ZNF680Q8NEM1 530 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 ZNF431Q8TF32 576 aaPredicted RBP8.18□□□□□ -1.1
LIG3-209ENST00000586435 LINC00467Q9BRT7 94 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 DNAJC4Q9NNZ3 241 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 ZNF586Q9NXT0 402 aa8.18□□□□□ -1.1
LIG3-209ENST00000586435 A0A096LPF7 62 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 SLC25A5P05141 298 aaKnown RBP8.17□□□□□ -1.1
LIG3-209ENST00000586435 RAB31Q13636 194 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 Q6ZRN7 208 aaPredicted RBP8.17□□□□□ -1.1
LIG3-209ENST00000586435 C11orf72Q8NBR9 251 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 OR1L4Q8NGR5 311 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 VSIG2Q96IQ7 327 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 PFDN5Q99471 154 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 GSKIPQ9P0R6 139 aa8.17□□□□□ -1.1
LIG3-209ENST00000586435 C7orf71A4D174 169 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 CCDC160A6NGH7 325 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 CENPXA8MT69 81 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 KLLNB2CW77 178 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 J3KRW8 73 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 L7N2F9 121 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 LINC00315P59091 139 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 VAMP2P63027 116 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 VWC2Q2TAL6 325 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 ANXA2RQ3ZCQ2 193 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 MIC13Q5XKP0 118 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 NRARPQ7Z6K4 114 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 FAM19A4Q96LR4 140 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 SDHCQ99643 169 aaPredicted RBP8.16□□□□□ -1.1
LIG3-209ENST00000586435 RBM38Q9H0Z9 239 aaKnown RBP8.16□□□□□ -1.1
LIG3-209ENST00000586435 WDR83OSQ9Y284 106 aa8.16□□□□□ -1.1
LIG3-209ENST00000586435 TRGV2A0A075B6R0 118 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 TRAV5A0A0B4J249 113 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 RPL29P47914 159 aaKnown RBP8.15□□□□□ -1.1
LIG3-209ENST00000586435 PDE6HQ13956 83 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 CHAC2Q8WUX2 184 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 C11orf1Q9H5F2 150 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 GSN-AS1Q9NRJ2 163 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 UQCC1Q9NVA1 299 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 TMEM14CQ9P0S9 112 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 PRELID1Q9Y255 219 aa8.15□□□□□ -1.1
LIG3-209ENST00000586435 TRBV19A0A075B6N1 114 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 SIVA1O15304 175 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 SPINK4O60575 86 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 ZNF324O75467 553 aaPredicted RBP8.14□□□□□ -1.11
LIG3-209ENST00000586435 CRISP2P16562 243 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 TCL1AP56279 114 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 ZNF846Q147U1 533 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 IBA57Q5T440 356 aaKnown RBP8.14□□□□□ -1.11
LIG3-209ENST00000586435 CDPF1Q6NVV7 123 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 C12orf45Q8N5I9 185 aaPredicted RBP8.14□□□□□ -1.11
LIG3-209ENST00000586435 EIF4E3Q8N5X7 224 aaKnown RBP8.14□□□□□ -1.11
LIG3-209ENST00000586435 LINC00477Q96M19 166 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 C20orf85Q9H1P6 137 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 SLC39A9Q9NUM3 307 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 FUT9Q9Y231 359 aa8.14□□□□□ -1.11
LIG3-209ENST00000586435 LSM5Q9Y4Y9 91 aaKnown RBP8.14□□□□□ -1.11
LIG3-209ENST00000586435 TRGV1A0A0A0MS02 117 aa8.13□□□□□ -1.11
LIG3-209ENST00000586435 M0R3E3 92 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms