RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 RPUSD4Q96CM3 377 aaKnown RBP10.03□□□□□ -0.8
CLN3-235ENST00000568497 SAT2Q96F10 170 aaPredicted RBP10.03□□□□□ -0.8
CLN3-235ENST00000568497 GPR82Q96P67 336 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 PFDN5Q99471 154 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 ZNF331Q9NQX6 463 aaPredicted RBP10.03□□□□□ -0.8
CLN3-235ENST00000568497 RPRMQ9NS64 109 aa10.03□□□□□ -0.8
CLN3-235ENST00000568497 A0A1B0GVG6 124 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 MEOX2P50222 304 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 CD300CQ08708 224 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 AMTNQ6UX39 209 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 S100A7AQ86SG5 101 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 BAP18Q8IXM2 172 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 PHYHIPLQ96FC7 376 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 X6R8D5 127 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 DNAH11Q96DT5 4516 aa10.02□□□□□ -0.81
CLN3-235ENST00000568497 DYNC1H1Q14204 4646 aaKnown RBP10.02□□□□□ -0.81
CLN3-235ENST00000568497 IGHV4-28A0A0C4DH34 117 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 C17orf112F2Z3M2 114 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 SPP1P10451 314 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 NANOS2P60321 138 aaKnown RBP10.01□□□□□ -0.81
CLN3-235ENST00000568497 RHOBP62745 196 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 SSX7Q7RTT5 188 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 INO80EQ8NBZ0 244 aaPredicted RBP10.01□□□□□ -0.81
CLN3-235ENST00000568497 OR8A1Q8NGG7 326 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 FXYD5Q96DB9 178 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 PAXXQ9BUH6 204 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 HRH4Q9H3N8 390 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 FUT9Q9Y231 359 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 FAT2Q9NYQ8 4349 aa10.01□□□□□ -0.81
CLN3-235ENST00000568497 TRBV19A0A075B6N1 114 aa10□□□□□ -0.81
CLN3-235ENST00000568497 IGKV2-40A0A087WW87 121 aaPredicted RBP10□□□□□ -0.81
CLN3-235ENST00000568497 OR7C2O60412 319 aa10□□□□□ -0.81
CLN3-235ENST00000568497 IGKV2D-40P01614 121 aaPredicted RBP10□□□□□ -0.81
CLN3-235ENST00000568497 CXCL2P19875 107 aa10□□□□□ -0.81
CLN3-235ENST00000568497 EMP1P54849 157 aa10□□□□□ -0.81
CLN3-235ENST00000568497 PSG9Q00887 426 aa10□□□□□ -0.81
CLN3-235ENST00000568497 LCN15Q6UWW0 184 aa10□□□□□ -0.81
CLN3-235ENST00000568497 Q6ZNX1 250 aa10□□□□□ -0.81
CLN3-235ENST00000568497 C1orf158Q8N1D5 194 aa10□□□□□ -0.81
CLN3-235ENST00000568497 OR51M1Q9H341 326 aa10□□□□□ -0.81
CLN3-235ENST00000568497 CYTL1Q9NRR1 136 aa10□□□□□ -0.81
CLN3-235ENST00000568497 RNF24Q9Y225 148 aa10□□□□□ -0.81
CLN3-235ENST00000568497 TP53TG1Q9Y2A0 90 aa10□□□□□ -0.81
CLN3-235ENST00000568497 HIST1H1EP10412 219 aaKnown RBP9.99□□□□□ -0.81
CLN3-235ENST00000568497 ICAM4Q14773 271 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 MORN3Q6PF18 240 aaPredicted RBP9.99□□□□□ -0.81
CLN3-235ENST00000568497 Q8NAQ8 132 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 RNF141Q8WVD5 230 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 ST6GAL2Q96JF0 529 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 CELA1Q9UNI1 258 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 TIMM9Q9Y5J7 89 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 DNAH2Q9P225 4427 aa9.99□□□□□ -0.81
CLN3-235ENST00000568497 PRSS29PA6NIE9 313 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 ZNF705GA8MUZ8 300 aaPredicted RBP9.98□□□□□ -0.81
CLN3-235ENST00000568497 CRXO43186 299 aaPredicted RBP9.98□□□□□ -0.81
CLN3-235ENST00000568497 Q6ZQT7 251 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 OR10G4Q8NGN3 311 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 OR10G9Q8NGN4 311 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 OR10G7Q8NGN6 311 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 TMEM14CQ9P0S9 112 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 RPH3ALQ9UNE2 315 aa9.98□□□□□ -0.81
CLN3-235ENST00000568497 NBEAP1P0C6P0 100 aa9.97□□□□□ -0.81
CLN3-235ENST00000568497 CT45A10P0DMU9 189 aa9.97□□□□□ -0.81
CLN3-235ENST00000568497 RANP62826 216 aaKnown RBP9.97□□□□□ -0.81
CLN3-235ENST00000568497 UBE2L3P68036 154 aaKnown RBP9.97□□□□□ -0.81
CLN3-235ENST00000568497 ACOT6Q3I5F7 207 aaPredicted RBP9.97□□□□□ -0.81
CLN3-235ENST00000568497 VGLL1Q99990 258 aa9.97□□□□□ -0.81
CLN3-235ENST00000568497 SLC50A1Q9BRV3 221 aa9.97□□□□□ -0.81
CLN3-235ENST00000568497 MRPL32Q9BYC8 188 aaKnown RBP9.97□□□□□ -0.81
CLN3-235ENST00000568497 DNAH17Q9UFH2 4485 aa9.97□□□□□ -0.81
CLN3-235ENST00000568497 ZNF705EA8MWA4 302 aaPredicted RBP9.96□□□□□ -0.82
CLN3-235ENST00000568497 HTN1P15515 57 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 M6PRP20645 277 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 ZNF726P1Q15940 193 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 SAMD13Q5VXD3 122 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 OR2G3Q8NGZ4 309 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 Q8TAT8 98 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 HYLS1Q96M11 299 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 KCNIP2Q9NS61 270 aa9.96□□□□□ -0.82
CLN3-235ENST00000568497 A8MTW9 85 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 BOLA2-SMG1P6H3BVE0 249 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 DUSP14O95147 198 aaKnown RBP9.95□□□□□ -0.82
CLN3-235ENST00000568497 ARL14EPLP0DKL9 152 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 AZU1P20160 251 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 FGF8P55075 233 aaPredicted RBP9.95□□□□□ -0.82
CLN3-235ENST00000568497 GNG5P63218 68 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 ZNF266Q14584 549 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 Q9H3A6 140 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 TMPRSS5Q9H3S3 457 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 PPP1R14DQ9NXH3 145 aa9.95□□□□□ -0.82
CLN3-235ENST00000568497 HSPG2P98160 4391 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 A0A1B0GV50 99 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 A0A1W2PPV4 95 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 CDC34P49427 236 aaPredicted RBP9.94□□□□□ -0.82
CLN3-235ENST00000568497 FHITP49789 147 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 TCTAP57738 103 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 PRR9Q5T870 116 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 ZNF705AQ6ZN79 300 aaPredicted RBP9.94□□□□□ -0.82
CLN3-235ENST00000568497 ZNF575Q86XF7 245 aa9.94□□□□□ -0.82
CLN3-235ENST00000568497 IQCF2Q8IXL9 164 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms