RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 TMEM37Q8WXS4 190 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 SFRP2Q96HF1 295 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 FAM167A-AS1Q96KT0 104 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 SIRPDQ9H106 197 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 ZNF355PQ9NSJ1 428 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 THYN1Q9P016 225 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 HIGD1AQ9Y241 93 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 TRAV5A0A0B4J249 113 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 IGHV4-61A0A0C4DH41 118 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 A0A1W2PRD5 423 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 A0A1W2PRF3 423 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 A0A1W2PRM7 423 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 TMEM89A2RUT3 159 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 I3L2K1 104 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 NDUFS8O00217 210 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 IGHV3-48P01763 117 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 TRGC2P03986 189 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 OR10J4P0C629 311 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 RD3LP0DJH9 198 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 APELAP0DMC3 54 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 CRYBB3P26998 211 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 S100A7P31151 101 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 CNN1P51911 297 aaKnown RBP4.59□□□□□ -1.67
VPS39-209ENST00000568029 MFAP2P55001 183 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 LMO4P61968 165 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 PATE2Q6UY27 113 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 LINC00305Q7Z4B0 112 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 LHFPL4Q7Z7J7 247 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 NECAP1Q8NC96 275 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 ARPC1AQ92747 370 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 RASL11BQ9BPW5 248 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 CHRDL1Q9BU40 450 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 DERL1Q9BUN8 251 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 SLC25A2Q9BXI2 301 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 PLCE1Q9P212 2302 aa4.59□□□□□ -1.67
VPS39-209ENST00000568029 COL7A1Q02388 2944 aa4.59□□□□□ -1.68
VPS39-209ENST00000568029 DNAH1Q9P2D7 4330 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 IGHV3-21A0A0B4J1V1 117 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 A0A0U1RQK1 487 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 A0A1W2PPQ1 181 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 ZNF320A2RRD8 509 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BKO60814 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 TYMSP04818 313 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BJP06899 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 NBEAP1P0C6P0 100 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H1BP16401 226 aaKnown RBP4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BOP23527 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 S100A2P29034 98 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BBP33778 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 CDX1P47902 265 aaPredicted RBP4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BDP58876 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 DSCR9P59020 149 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 ERVFC1-1P60608 527 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BCP62807 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 CX3CL1P78423 397 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST2H2BEQ16778 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 PAPPA-AS1Q5QFB9 102 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.58□□□□□ -1.68
VPS39-209ENST00000568029 LDLRAD2Q5SZI1 272 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 WDR73Q6P4I2 378 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 TEX38Q6PEX7 206 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 CLEC2AQ6UVW9 174 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 TTC9CQ8N5M4 171 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 Q8N6K4 173 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 C10orf105Q8TEF2 133 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 FRZBQ92765 325 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BHQ93079 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 ZNF479Q96JC4 524 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 RBM14Q96PK6 669 aaKnown RBP4.58□□□□□ -1.68
VPS39-209ENST00000568029 C12orf57Q99622 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 TXN2Q99757 166 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BNQ99877 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 HIST1H2BMQ99879 126 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 BPESC1Q9GZL8 116 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 OSTCQ9NRP0 149 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 IL36BQ9NZH7 164 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 MRPL36Q9P0J6 103 aaKnown RBP4.58□□□□□ -1.68
VPS39-209ENST00000568029 TMEM14CQ9P0S9 112 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 PITPNC1Q9UKF7 332 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 DSCAML1Q8TD84 2053 aa4.58□□□□□ -1.68
VPS39-209ENST00000568029 TRBV20OR9-2A0A075B6H5 130 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 PGPA6NDG6 321 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 ZNF98A6NK75 572 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GGTLC3B5MD39 225 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 K7EIM0 57 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 PEX7O00628 323 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 ISLRO14498 428 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 NPFFO15130 113 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GNG7O60262 68 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 TGFAP01135 160 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 GCGP01275 180 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 HLA-DRB1P01911 266 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 SLC25A5P05141 298 aaKnown RBP4.57□□□□□ -1.68
VPS39-209ENST00000568029 TRGC1P0CF51 173 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 IGLC1P0CG04 106 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 SMIM6P0DI80 62 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 PYYP10082 97 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 MGST1P10620 155 aaKnown RBP4.57□□□□□ -1.68
VPS39-209ENST00000568029 HNF1AP20823 631 aa4.57□□□□□ -1.68
VPS39-209ENST00000568029 CD24P25063 80 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms