RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 FAM25AB3EWG3 89 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 FAM25CB3EWG5 89 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 FAM25GB3EWG6 89 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 DISC1C4P0D8 188 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 SLC25A5P05141 298 aaKnown RBP11.17□□□□□ -0.62
CDH3-205ENST00000566808 CT45A10P0DMU9 189 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 SRPXP78539 464 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 FHL2Q14192 279 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 EIF4E3Q8N5X7 224 aaKnown RBP11.17□□□□□ -0.62
CDH3-205ENST00000566808 ZBTB8BQ8NAP8 495 aaPredicted RBP11.17□□□□□ -0.62
CDH3-205ENST00000566808 KLF12Q9Y4X4 402 aa11.17□□□□□ -0.62
CDH3-205ENST00000566808 PIGBOS1A0A0B4J2F0 54 aa11.16□□□□□ -0.62
CDH3-205ENST00000566808 C7orf71A4D174 169 aa11.16□□□□□ -0.62
CDH3-205ENST00000566808 PITX3O75364 302 aa11.16□□□□□ -0.62
CDH3-205ENST00000566808 MED6O75586 246 aa11.16□□□□□ -0.62
CDH3-205ENST00000566808 ANXA7P20073 488 aaKnown RBP11.16□□□□□ -0.62
CDH3-205ENST00000566808 SELENOTP62341 195 aa11.16□□□□□ -0.62
CDH3-205ENST00000566808 MRPL32Q9BYC8 188 aaKnown RBP11.16□□□□□ -0.62
CDH3-205ENST00000566808 MRPL16Q9NX20 251 aaKnown RBP11.16□□□□□ -0.62
CDH3-205ENST00000566808 IGHV3-38A0A0C4DH36 116 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 IBA57-AS1B1ANH7 110 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 E5RGE8 158 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 SLC17A3O00476 420 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 SSBP1Q04837 148 aaKnown RBP11.15□□□□□ -0.62
CDH3-205ENST00000566808 ZNF415Q09FC8 603 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 LINC01556Q5JQF7 62 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 C15orf40Q8WUR7 153 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 TXNDC17Q9BRA2 123 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 Q9HAA7 133 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 PXMP4Q9Y6I8 212 aa11.15□□□□□ -0.62
CDH3-205ENST00000566808 TRGV4A0A0C4DH28 118 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 ORM1P02763 201 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 ANXA3P12429 323 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 GYPEP15421 78 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 ASAH1Q13510 395 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 YIPF6Q96EC8 236 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 PRRT1Q99946 306 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 EXTL2Q9UBQ6 330 aa11.14□□□□□ -0.63
CDH3-205ENST00000566808 DUXBA0A1W2PPF3 345 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 SMCO3A2RU48 225 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 ANKRD65E5RJM6 399 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 C4orf46Q504U0 113 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 BPIFA4PQ86YQ2 179 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 OR51S1Q8NGJ8 323 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 CHAC1Q9BUX1 264 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 ARL6Q9H0F7 186 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 ARV1Q9H2C2 271 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 Q9H521 79 aa11.13□□□□□ -0.63
CDH3-205ENST00000566808 KLLNB2CW77 178 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 SNRPCP09234 159 aaKnown RBP11.12□□□□□ -0.63
CDH3-205ENST00000566808 SLC25A6P12236 298 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 TDRG1Q3Y452 100 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 MZT2AQ6P582 158 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 PATE2Q6UY27 113 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 IQCF2Q8IXL9 164 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 BOLA1Q9Y3E2 137 aa11.12□□□□□ -0.63
CDH3-205ENST00000566808 C9JCJ5 164 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 H3BP45 60 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 WRBO00258 174 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 SYNGR2O43760 224 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 AKAIN1P0CW23 69 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 TIRAPP58753 221 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 BTN1A1Q13410 526 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 WFDC2Q14508 124 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 SPANXN5Q5MJ07 72 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 PXDC1Q5TGL8 231 aa11.11□□□□□ -0.63
CDH3-205ENST00000566808 STRAPQ9Y3F4 350 aaKnown RBP11.11□□□□□ -0.63
CDH3-205ENST00000566808 H3BTX0 84 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 K7EPK0 472 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 MPDU1O75352 247 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 NCS1P62166 190 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 MRPS10P82664 201 aaKnown RBP11.1□□□□□ -0.63
CDH3-205ENST00000566808 LAGE3Q14657 143 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 MORN5Q5VZ52 161 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 SH2D6Q7Z4S9 175 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 SCGB3A2Q96PL1 93 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 TM2D2Q9BX73 214 aa11.1□□□□□ -0.63
CDH3-205ENST00000566808 TNXBP22105 4242 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 IGLV2-8P01709 118 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 IGLC2P0DOY2 106 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 PPT1P50897 306 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 CD300CQ08708 224 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 ACOT6Q3I5F7 207 aaPredicted RBP11.09□□□□□ -0.63
CDH3-205ENST00000566808 LINC00305Q7Z4B0 112 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 BLNKQ8WV28 456 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 AP3S1Q92572 193 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 ARPC5LQ9BPX5 153 aa11.09□□□□□ -0.63
CDH3-205ENST00000566808 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.08□□□□□ -0.64
CDH3-205ENST00000566808 RGS13O14921 159 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 OR4E1P0C645 316 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 SFTA3P0C7M3 94 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 MT1HL1P0DM35 61 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 CLVS1Q8IUQ0 354 aaPredicted RBP11.08□□□□□ -0.64
CDH3-205ENST00000566808 OR10G4Q8NGN3 311 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 CIRBP-AS1Q8TBR5 109 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 MRPL53Q96EL3 112 aaKnown RBP11.08□□□□□ -0.64
CDH3-205ENST00000566808 SAT2Q96F10 170 aaPredicted RBP11.08□□□□□ -0.64
CDH3-205ENST00000566808 SLC25A31Q9H0C2 315 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 TP53TG3Q9ULZ0 132 aa11.08□□□□□ -0.64
CDH3-205ENST00000566808 TNFSF8P32971 234 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms