RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ARL16Q0P5N6 197 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 TMEM144Q7Z5S9 345 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 ZNF114Q8NC26 417 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 CSNK1G2-AS1Q8NCQ2 148 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 LINC00052Q96N35 136 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 PFDN5Q99471 154 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 RSG1Q9BU20 258 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 MAP1LC3BQ9GZQ8 125 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 ZFAND3Q9H8U3 227 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 RNF24Q9Y225 148 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 PRELID1Q9Y255 219 aa5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 CARHSP1Q9Y2V2 147 aaKnown RBP5.86□□□□□ -1.47
CCDC88C-214ENST00000557507 DNAH5Q8TE73 4624 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 TRAV2A0A0B4J234 112 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 DNASE2O00115 360 aaPredicted RBP5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 CDK2AP2O75956 126 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 CXorf1O96002 111 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 CDC34P49427 236 aaPredicted RBP5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 B2MP61769 119 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 BSXQ3C1V8 233 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 SOHLH1Q5JUK2 328 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 TOMM20LQ6UXN7 152 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 UBE2DNLQ8IWF7 75 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 STXBP6Q8NFX7 210 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 OR1L4Q8NGR5 311 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 OR1P1Q8NH06 330 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 MISP3Q96FF7 219 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 RPRMQ9NS64 109 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 RABAC1Q9UI14 185 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 VAX2Q9UIW0 290 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 PXMP4Q9Y6I8 212 aa5.85□□□□□ -1.47
CCDC88C-214ENST00000557507 C16orf90A8MZG2 172 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 K7EQG2 157 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 ZNF688P0C7X2 276 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 RNASE2P10153 161 aaKnown RBP5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 BCL2P10415 239 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 FHITP49789 147 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 MFAP4P55083 255 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 RPL11P62913 178 aaKnown RBP5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 TNP2Q05952 138 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 FAM74A3Q4VXF1 159 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 ZNF506Q5JVG8 444 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 ACTL10Q5JWF8 245 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 C10orf91Q5T1B1 145 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 FAM122CQ6P4D5 195 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 MORN3Q6PF18 240 aaPredicted RBP5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 LCN15Q6UWW0 184 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 NIPSNAP3BQ9BS92 247 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 MRPL32Q9BYC8 188 aaKnown RBP5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 NKX6-2Q9C056 277 aaPredicted RBP5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 GNG13Q9P2W3 67 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 SLC45A2Q9UMX9 530 aa5.84□□□□□ -1.47
CCDC88C-214ENST00000557507 TRAV30A0A087WSZ9 112 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 ZFP92A6NM28 416 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 B4DEV8 164 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 PRSS46E5RG02 174 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 PDE6DO43924 150 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 GNG7O60262 68 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 CLN5O75503 358 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 PNRC1Q12796 327 aaPredicted RBP5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 RHEBQ15382 184 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 C1orf134Q5TEV5 83 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 IQCF2Q8IXL9 164 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 DCANP1Q8TF63 244 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 GRAMD2BQ96HH9 432 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 TXN2Q99757 166 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 TMEM167BQ9NRX6 74 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 PUS1Q9Y606 427 aaKnown RBP eCLIP5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 ARL2-SNX15V9GYD0 113 aa5.83□□□□□ -1.48
CCDC88C-214ENST00000557507 FLG2Q5D862 2391 aaPredicted RBP5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 LOC102723971A0A1B0GUV8 181 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 F6UZH7 168 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 TMEM250H0YL14 139 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 NPBWR1P48145 328 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 MEF2BQ02080 365 aaPredicted RBP5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 GAMTQ14353 236 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 PQLC2Q6ZP29 291 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 CYP2G1PQ6ZSU1 146 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 Q8N1X5 172 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 RAB24Q969Q5 203 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 ACY3Q96HD9 319 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 UHRF2Q96PU4 802 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 MGST2Q99735 147 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 TMEM231Q9H6L2 316 aa5.82□□□□□ -1.48
CCDC88C-214ENST00000557507 A0A1B0GV50 99 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 M0R036 132 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 COX7A2P2O60397 106 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 ZNF600Q6ZNG1 722 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 THAP8Q8NA92 274 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 RXFP4Q8TDU9 374 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 RPUSD4Q96CM3 377 aaKnown RBP5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 TVP23CQ96ET8 276 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 TRGV9Q99603 122 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 SLC25A22Q9H936 323 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 DNAJC4Q9NNZ3 241 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 SMCO4Q9NRQ5 59 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 MRPL36Q9P0J6 103 aaKnown RBP5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 XCL2Q9UBD3 114 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 FUT9Q9Y231 359 aa5.81□□□□□ -1.48
CCDC88C-214ENST00000557507 SRP19P09132 144 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms