RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 S100A10P60903 97 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 MYL5Q02045 173 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 C22orf39Q6P5X5 142 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 ZNF767PQ75MW2 155 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 RPS19BP1Q86WX3 136 aaKnown RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 GKN2Q86XP6 184 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 YPEL2Q96QA6 119 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 Q9H521 79 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 METTL1Q9UBP6 276 aaKnown RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 SCP2D1Q9UJQ7 156 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 SNX12Q9UMY4 172 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 ANKRD31Q8N7Z5 1873 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 KDM6AO15550 1401 aaPredicted RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 KIAA1107Q9UPP5 1409 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 ARHGAP32A7KAX9 2087 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 URB2Q14146 1524 aaKnown RBP2.32□□□□□ -2.04
LINC00643-204ENST00000555934 CLASP1Q7Z460 1538 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 KIAA0586Q9BVV6 1533 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 KDM5CP41229 1560 aa2.32□□□□□ -2.04
LINC00643-204ENST00000555934 E9PCH4 1651 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 CROCC2H7BZ55 1655 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 LRRIQ1Q96JM4 1722 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 DOCK4Q8N1I0 1966 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 IGHV3-73A0A0B4J1V6 119 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 C19orf84I3L1E1 186 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 K7ERJ3 54 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 HIST1H2BKO60814 126 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 NDUFB2O95178 105 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 HIST1H2BJP06899 126 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 BRS3P32247 399 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 RNASE4P34096 147 aaKnown RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 HIST1H4AP62805 103 aaKnown RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 BTG2P78543 158 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 RPL18Q07020 188 aaKnown RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 IZUMO2Q6UXV1 221 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 BPIFA4PQ86YQ2 179 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 WFDC11Q8NEX6 87 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 CIB3Q96Q77 187 aaPredicted RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 MIEN1Q9BRT3 115 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 SNRNP25Q9BV90 132 aaKnown RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 XAGE1AQ9HD64 81 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 OSTCQ9NRP0 149 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 TXNL4BQ9NX01 149 aaKnown RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 MPC1Q9Y5U8 109 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 IER3IP1Q9Y5U9 82 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 ABCC5O15440 1437 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 TROQ12816 1431 aaPredicted RBP2.31□□□□□ -2.04
LINC00643-204ENST00000555934 MED14O60244 1454 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 ARHGEF5Q12774 1597 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 KIAA0556O60303 1618 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 ADAMTS7Q9UKP4 1686 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 SBF1O95248 1867 aa2.31□□□□□ -2.04
LINC00643-204ENST00000555934 MPC2O95563 127 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 C1QAP02745 245 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 IGKV1-16P04430 117 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 SLC25A5P05141 298 aaKnown RBP2.3□□□□□ -2.04
LINC00643-204ENST00000555934 CCL3P10147 92 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 HLA-DRB4P13762 266 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 HLA-DMBP28068 263 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 AQP4P55087 323 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 TMEM258P61165 79 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 PABPC1L2AQ5JQF8 200 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 HIST3H2BBQ8N257 126 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 LINC00311Q8N616 119 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 C5orf17Q8NAS9 161 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 MORN4Q8NDC4 146 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 DPH3Q96FX2 82 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 PRELID3AQ96N28 172 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 HIST1H2BLQ99880 126 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 SPANXDQ9BXN6 97 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 NPCDR1Q9BY65 106 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 TTTY13Q9BZ97 58 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 C11orf1Q9H5F2 150 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 TMEM106BQ9NUM4 274 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 TAS2R8Q9NYW2 309 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 EPDR1Q9UM22 224 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 V9GYS6 101 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 HLA-DRB4X5D2U9 266 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 A2ML1A8K2U0 1454 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 MAGI2Q86UL8 1455 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 IFT140Q96RY7 1462 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 MAST1Q9Y2H9 1570 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 EIF2AK4Q9P2K8 1649 aaKnown RBP2.3□□□□□ -2.04
LINC00643-204ENST00000555934 CACNA1GO43497 2377 aa2.3□□□□□ -2.04
LINC00643-204ENST00000555934 ICE1Q9Y2F5 2266 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 DSCAMO60469 2012 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 ATG2AQ2TAZ0 1938 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 PIK3C2AO00443 1686 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 RAPGEF6Q8TEU7 1601 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 DISP1Q96F81 1524 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 MAGI1Q96QZ7 1491 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-204ENST00000555934 BLMP54132 1417 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-204ENST00000555934 TRGV10A0A0A0MS01 117 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 M0R129 80 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 UQCRQO14949 82 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 TNFP01375 233 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 MT-ND6P03923 174 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 CD14P08571 375 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 PYYP10082 97 aa2.29□□□□□ -2.04
LINC00643-204ENST00000555934 FXYD7P58549 80 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms