RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ICAM4Q14773 271 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 UQCC3Q6UW78 93 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 BLNKQ8WV28 456 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 RPUSD4Q96CM3 377 aaKnown RBP7.13□□□□□ -1.27
LIMA1-211ENST00000552338 GNG13Q9P2W3 67 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 EPDR1Q9UM22 224 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 AGRNO00468 2067 aa7.13□□□□□ -1.27
LIMA1-211ENST00000552338 CMYA5Q8N3K9 4069 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 DIRC3C9JPN6 131 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 C11orf94C9JXX5 98 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 F6UZH7 168 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 TCRAP04437 139 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 RPL11P62913 178 aaKnown RBP7.12□□□□□ -1.27
LIMA1-211ENST00000552338 ODF3L2Q3SX64 289 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 C9orf47Q6ZRZ4 202 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 EXOC3-AS1Q8N2X6 119 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 FAM24BQ8N5W8 94 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 C2CD4CQ8TF44 421 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 PCNPQ8WW12 178 aaKnown RBP7.12□□□□□ -1.27
LIMA1-211ENST00000552338 C20orf173Q96LM9 149 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 ATG101Q9BSB4 218 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 MAP6D1Q9H9H5 199 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 LENEPQ9Y5L5 61 aa7.12□□□□□ -1.27
LIMA1-211ENST00000552338 VWFP04275 2813 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 A8MZ25 164 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 M0R3E3 92 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 S100A9P06702 114 aaKnown RBP7.11□□□□□ -1.27
LIMA1-211ENST00000552338 HLA-DMBP28068 263 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 ATP5G3P48201 142 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 PEA15Q15121 130 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 NDUFA5Q16718 116 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 OXLD1Q5BKU9 147 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 FOXI2Q6ZQN5 318 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 COX8CQ7Z4L0 72 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 Q8N1Y9 231 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 GBGT1Q8N5D6 347 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 TMEM75Q8N9X5 138 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 FAM19A4Q96LR4 140 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 LINC00477Q96M19 166 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 RARRES2Q99969 163 aa7.11□□□□□ -1.27
LIMA1-211ENST00000552338 SAV1Q9H4B6 383 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-211ENST00000552338 IGKV3-7A0A075B6H7 116 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 A0A0J9YX75 114 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 A0A1B0GV50 99 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 NPIPB6E9PJ23 425 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 H3BTX0 84 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 IGLV2-11P01706 119 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 SRP19P09132 144 aaKnown RBP7.1□□□□□ -1.27
LIMA1-211ENST00000552338 SNRPCP09234 159 aaKnown RBP7.1□□□□□ -1.27
LIMA1-211ENST00000552338 ZNF688P0C7X2 276 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 HLA-DRB4P13762 266 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 CSN1S1P47710 185 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 TAS2R60P59551 318 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 UBE2G2P60604 165 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 HAGHQ16775 308 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 TMEM183BQ1AE95 376 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 TOR2AQ5JU69 321 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 CST9LP1Q5W188 147 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 WFDC3Q8IUB2 231 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 IQCF2Q8IXL9 164 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 RNF182Q8N6D2 247 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 CYB561D1Q8N8Q1 229 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 OR8A1Q8NGG7 326 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 CMTM2Q8TAZ6 248 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 SMIM12Q96EX1 92 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 ODF3Q96PU9 254 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 EIF5A2Q9GZV4 153 aaKnown RBP7.1□□□□□ -1.27
LIMA1-211ENST00000552338 HLA-DRB4X5D2U9 266 aa7.1□□□□□ -1.27
LIMA1-211ENST00000552338 ZNF705FA8MVS1 300 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-211ENST00000552338 OR11H12B2RN74 326 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 H3BMM0 161 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 PEX7O00628 323 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 DUSP14O95147 198 aaKnown RBP7.09□□□□□ -1.27
LIMA1-211ENST00000552338 CD7P09564 240 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 SMCPP49901 116 aaPredicted RBP7.09□□□□□ -1.27
LIMA1-211ENST00000552338 DEFB131AP59861 70 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 KRTAP10-11P60412 298 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 SRSF3P84103 164 aaKnown RBP7.09□□□□□ -1.27
LIMA1-211ENST00000552338 GUCA2BQ16661 112 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 PSMG4Q5JS54 123 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 IGFL4Q6B9Z1 124 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 APRG1Q8IVJ8 170 aa7.09□□□□□ -1.27
LIMA1-211ENST00000552338 C9JCJ5 164 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 C9JQL5 133 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 PRAC2D3DTV9 90 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 G3V4G9 280 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 K7EQM0 130 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 CRISP2P16562 243 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 TFPI2P48307 235 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 LINC01559Q495D7 138 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 FAM74A3Q4VXF1 159 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 LINC00322Q6ZN03 302 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-211ENST00000552338 GTSCR1Q86UQ5 136 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 ZNF738Q8NE65 137 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 FMC1Q96HJ9 113 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 LINC00052Q96N35 136 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 MLST8Q9BVC4 326 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 AGPAT4-IT1Q9H0P7 198 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 SLC35B3Q9H1N7 401 aa7.08□□□□□ -1.28
LIMA1-211ENST00000552338 ZNF492Q9P255 531 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms