RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 V9GYV3 84 aa10.3□□□□□ -0.76
PTCH1-215ENST00000547672 PDZD2O15018 2839 aa10.3□□□□□ -0.76
PTCH1-215ENST00000547672 ITPR3Q14573 2671 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 XKRY2A2RUG3 117 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 SLC17A3O00476 420 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 ZNF207O43670 478 aaKnown RBP10.29□□□□□ -0.76
PTCH1-215ENST00000547672 TRBV12-3P01733 135 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 CXCL1P09341 107 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 WDR73Q6P4I2 378 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 RASL11AQ6T310 242 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 Q6ZSV7 163 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 NUDT10Q8NFP7 164 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 C4orf3Q8WVX3 66 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 NUDT11Q96G61 164 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 RHPN1-AS1Q9BWJ2 59 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 UNC79Q9P2D8 2635 aa10.29□□□□□ -0.76
PTCH1-215ENST00000547672 SMIM27A0A1W2PRY6 76 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 A8MWP6 167 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 OVOL1O14753 267 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 CHEK1O14757 476 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 IGLV2-11P01706 119 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 HILS1P60008 231 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 RPL11P62913 178 aaKnown RBP10.28□□□□□ -0.76
PTCH1-215ENST00000547672 UNQ9165/PRO28630Q6UXU0 137 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 C8orf86Q6ZUL3 223 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 COX8CQ7Z4L0 72 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 GBGT1Q8N5D6 347 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 TSKUQ8WUA8 353 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 DUX5Q96PT3 197 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 GFRA4Q9GZZ7 299 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 RNASE7Q9H1E1 156 aaKnown RBP10.28□□□□□ -0.76
PTCH1-215ENST00000547672 RPP21Q9H633 154 aaKnown RBP10.28□□□□□ -0.76
PTCH1-215ENST00000547672 NRN1Q9NPD7 142 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 PPP1R14DQ9NXH3 145 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 PEMTQ9UBM1 199 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 NAT8BQ9UHF3 227 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 LENEPQ9Y5L5 61 aa10.28□□□□□ -0.76
PTCH1-215ENST00000547672 IGHV3-66A0A0C4DH42 116 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 NDUFA7O95182 113 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 LY6G6DO95868 133 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 APOHP02749 345 aaPredicted RBP10.27□□□□□ -0.77
PTCH1-215ENST00000547672 MT-ND6P03923 174 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 RPS20P60866 119 aaKnown RBP10.27□□□□□ -0.77
PTCH1-215ENST00000547672 PAFAH1B2P68402 229 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 TMEM78Q5T7P6 136 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 PRR27Q6MZM9 219 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 LCNL1Q6ZST4 164 aa10.27□□□□□ -0.77
PTCH1-215ENST00000547672 C19orf71A6NCJ1 209 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 IZUMO1RA6ND01 250 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 LINC01619G3V211 115 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 M0R3E3 92 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 SMUG1Q53HV7 270 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 TM4SF20Q53R12 229 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 Q6AWC8 147 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 OR10J6PQ8NGY7 276 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 LINC00477Q96M19 166 aa10.26□□□□□ -0.77
PTCH1-215ENST00000547672 IGHV3OR16-13A0A075B7E8 117 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 IGHV3-49A0A0A0MS15 119 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 IGHV3-74A0A0B4J1X5 117 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 KLF5Q13887 457 aaPredicted RBP10.25□□□□□ -0.77
PTCH1-215ENST00000547672 FAM162BQ5T6X4 162 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 TCF24Q7RTU0 167 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 ATP5L2Q7Z4Y8 100 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 NHLRC2Q8NBF2 726 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 OR1N2Q8NGR9 330 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 PRR25Q96S07 402 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 ASCL2Q99929 193 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 CCDC168Q8NDH2 2452 aa10.25□□□□□ -0.77
PTCH1-215ENST00000547672 TRAV8-1A0A0A6YYK1 113 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 TRGC2P03986 189 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 S100A8P05109 93 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 HOXD3P31249 432 aaPredicted RBP10.24□□□□□ -0.77
PTCH1-215ENST00000547672 ZNF138P52744 262 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 SRSF2Q01130 221 aaKnown RBP10.24□□□□□ -0.77
PTCH1-215ENST00000547672 C9orf47Q6ZRZ4 202 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 ZNF738Q8NE65 137 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 BORCS7Q96B45 105 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 SGK494Q96LW2 274 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 GNB1LQ9BYB4 327 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 TRAPPC1Q9Y5R8 145 aa10.24□□□□□ -0.77
PTCH1-215ENST00000547672 ITPR2Q14571 2701 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 TRBV7-9A0A0J9YWB2 115 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 A0A1B0GUS0 222 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 LOC105371267A0A1B0GV96 52 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 A0A1B0GW15 77 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 FABP5P3A8MUU1 101 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 NPIPB6E9PJ23 425 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 SYNJ2BPP57105 145 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 SNRPD3P62318 126 aaKnown RBP10.23□□□□□ -0.77
PTCH1-215ENST00000547672 KHDC1LQ5JSQ8 128 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 C10orf99Q6UWK7 81 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 ESM1Q9NQ30 184 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 TSSC4Q9Y5U2 329 aaPredicted RBP10.23□□□□□ -0.77
PTCH1-215ENST00000547672 ZANQ9Y493 2812 aa10.23□□□□□ -0.77
PTCH1-215ENST00000547672 FLNAP21333 2647 aaKnown RBP10.22□□□□□ -0.77
PTCH1-215ENST00000547672 IGHV4OR15-8A0A075B7B6 117 aa10.22□□□□□ -0.77
PTCH1-215ENST00000547672 A0A087WW49 117 aa10.22□□□□□ -0.77
PTCH1-215ENST00000547672 IGKV2-40A0A087WW87 121 aaPredicted RBP10.22□□□□□ -0.77
PTCH1-215ENST00000547672 TRAV8-2A0A0B4J237 113 aa10.22□□□□□ -0.77
PTCH1-215ENST00000547672 TCF21O43680 179 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms