RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 MLST8Q9BVC4 326 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 AAMDCQ9H7C9 122 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 SMAD5-AS1Q9Y6J3 95 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 A0A1B0GUS0 222 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 FAM3BP58499 235 aaPredicted RBP9.54□□□□□ -0.88
SMAD3-204ENST00000540846 IBA57Q5T440 356 aaKnown RBP9.54□□□□□ -0.88
SMAD3-204ENST00000540846 TMEM75Q8N9X5 138 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 OR4X2Q8NGF9 303 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 WFDC12Q8WWY7 111 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 UBE2E2Q96LR5 201 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 RNASE7Q9H1E1 156 aaKnown RBP9.54□□□□□ -0.88
SMAD3-204ENST00000540846 BIN3Q9NQY0 253 aa9.54□□□□□ -0.88
SMAD3-204ENST00000540846 SERTM2A0A1B0GWG4 89 aa9.53□□□□□ -0.88
SMAD3-204ENST00000540846 PHOX2AO14813 284 aa9.53□□□□□ -0.88
SMAD3-204ENST00000540846 IGHV3-11P01762 117 aa9.53□□□□□ -0.88
SMAD3-204ENST00000540846 CD28P10747 220 aa9.53□□□□□ -0.88
SMAD3-204ENST00000540846 RPEL1Q2QD12 228 aa9.53□□□□□ -0.88
SMAD3-204ENST00000540846 ZNF320A2RRD8 509 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 ADARB2-AS1A8MUL3 147 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 DIRC3C9JPN6 131 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 K7EQM0 130 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 M0R3E3 92 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 HAX1O00165 279 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 APOHP02749 345 aaPredicted RBP9.52□□□□□ -0.89
SMAD3-204ENST00000540846 TRGC2P03986 189 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 C18orf65Q6ZTR6 163 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 SGK494Q96LW2 274 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 ZNF331Q9NQX6 463 aaPredicted RBP9.52□□□□□ -0.89
SMAD3-204ENST00000540846 ZNF492Q9P255 531 aa9.52□□□□□ -0.89
SMAD3-204ENST00000540846 TRAV8-1A0A0A6YYK1 113 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 CDX1P47902 265 aaPredicted RBP9.51□□□□□ -0.89
SMAD3-204ENST00000540846 MEOX2P50222 304 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 PSG3Q16557 428 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 UNQ9165/PRO28630Q6UXU0 137 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 TMEM183AQ8IXX5 376 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 CITED2Q99967 270 aaPredicted RBP9.51□□□□□ -0.89
SMAD3-204ENST00000540846 COL6A5A8TX70 2615 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 STAB1Q9NY15 2570 aa9.51□□□□□ -0.89
SMAD3-204ENST00000540846 ZNF207O43670 478 aaKnown RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 LGALS1P09382 135 aaKnown RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 CSN1S1P47710 185 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 C16orf54Q6UWD8 224 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 C11orf44Q8N8P7 122 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 GLMPQ8WWB7 406 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 SLC50A1Q9BRV3 221 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 IGHV3-66A0A0C4DH42 116 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 SMIM27A0A1W2PRY6 76 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 C5orf52A6NGY3 159 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 FBLL1A6NHQ2 334 aaKnown RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 ZNF785A8K8V0 405 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 ZNF705GA8MUZ8 300 aaPredicted RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 GATCO43716 136 aaKnown RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BKO60814 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 S100A6P06703 90 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BJP06899 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BOP23527 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BBP33778 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BDP58876 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BCP62807 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST2H2BEQ16778 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 ACTL10Q5JWF8 245 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 PRR27Q6MZM9 219 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 NUDT10Q8NFP7 164 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 C4orf3Q8WVX3 66 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 FRZBQ92765 325 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BHQ93079 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 NUDT11Q96G61 164 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BNQ99877 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 HIST1H2BMQ99879 126 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 SAV1Q9H4B6 383 aaPredicted RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 PEF1Q9UBV8 284 aaKnown RBP9.5□□□□□ -0.89
SMAD3-204ENST00000540846 PSG8Q9UQ74 426 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 ZFP30Q9Y2G7 519 aa9.5□□□□□ -0.89
SMAD3-204ENST00000540846 VWFP04275 2813 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 IGHV3OR16-13A0A075B7E8 117 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 IGHV3-49A0A0A0MS15 119 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 IGHV3-74A0A0B4J1X5 117 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 C19orf71A6NCJ1 209 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 CHEK1O14757 476 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 PRNTQ86SH4 94 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 GRAMD2BQ96HH9 432 aa9.49□□□□□ -0.89
SMAD3-204ENST00000540846 UBE2CO00762 179 aa9.48□□□□□ -0.89
SMAD3-204ENST00000540846 SNRPEP62304 92 aaKnown RBP9.48□□□□□ -0.89
SMAD3-204ENST00000540846 CT83Q5H943 113 aa9.48□□□□□ -0.89
SMAD3-204ENST00000540846 LINC00322Q6ZN03 302 aaPredicted RBP9.48□□□□□ -0.89
SMAD3-204ENST00000540846 CITED1Q99966 193 aa9.48□□□□□ -0.89
SMAD3-204ENST00000540846 TSSC4Q9Y5U2 329 aaPredicted RBP9.48□□□□□ -0.89
SMAD3-204ENST00000540846 IGHV4OR15-8A0A075B7B6 117 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 A0A087WW49 117 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 IGKV2-40A0A087WW87 121 aaPredicted RBP9.47□□□□□ -0.89
SMAD3-204ENST00000540846 A0A1W2PS18 150 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 NPIPB6E9PJ23 425 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 IGKV2D-40P01614 121 aaPredicted RBP9.47□□□□□ -0.89
SMAD3-204ENST00000540846 TRGC1P0CF51 173 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 DEFB136Q30KP8 78 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 C8orf86Q6ZUL3 223 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 COX8CQ7Z4L0 72 aa9.47□□□□□ -0.89
SMAD3-204ENST00000540846 GPHB5Q86YW7 130 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms