RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 UBE2D2P62837 147 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 EDDM3AQ14507 147 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 C3AR1Q16581 482 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 C3orf36Q3SXR2 165 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 VMA21Q3ZAQ7 101 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 FAM53AQ6NSI3 398 aaPredicted RBP5.27□□□□□ -1.57
USP28-207ENST00000538475 SH2D6Q7Z4S9 175 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 PRNTQ86SH4 94 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 AMN1Q8IY45 258 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 TMEM178AQ8NBL3 297 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 MYOZ3Q8TDC0 251 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 RPEQ96AT9 228 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 FLYWCH2Q96CP2 140 aaKnown RBP5.27□□□□□ -1.57
USP28-207ENST00000538475 RNF183Q96D59 192 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 HIST1H4GQ99525 98 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 MCRIP2Q9BUT9 160 aaKnown RBP5.27□□□□□ -1.57
USP28-207ENST00000538475 DKK4Q9UBT3 224 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 DKK2Q9UBU2 259 aa5.27□□□□□ -1.57
USP28-207ENST00000538475 F11RQ9Y624 299 aaKnown RBP5.27□□□□□ -1.57
USP28-207ENST00000538475 MYMXA0A1B0GTQ4 84 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 A8MWV9 139 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 PRSS1P07477 247 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 SLC25A16P16260 332 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 CD40P25942 277 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 UBE2D1P51668 147 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 LY6DQ14210 128 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 PAPPA-AS1Q5QFB9 102 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 ZC2HC1BQ5TFG8 222 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 LINC00696Q6ZRV3 163 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 ZNF826PQ6ZT77 177 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 GOLT1AQ6ZVE7 132 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 HARBI1Q96MB7 349 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 C20orf78Q9BR46 151 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 TNFRSF18Q9Y5U5 241 aa5.26□□□□□ -1.57
USP28-207ENST00000538475 TRBV19A0A075B6N1 114 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 IGKV2D-26A0A0A0MRZ7 120 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 H7C1H1 209 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 LINC01565O15544 149 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 NPYP01303 97 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 IGLV1-44P01699 117 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 IGLC6P0CF74 106 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 ORM2P19652 201 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 CD24P25063 80 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 LEPP41159 167 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 XGP55808 180 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 ATP5G2Q06055 141 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 LOXL1Q08397 574 aaPredicted RBP5.25□□□□□ -1.57
USP28-207ENST00000538475 GAGE2BQ13066 116 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 ALKBH6Q3KRA9 238 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 GAGE2EQ4V326 116 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 MORN3Q6PF18 240 aaPredicted RBP5.25□□□□□ -1.57
USP28-207ENST00000538475 LYZL1Q6UWQ5 148 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 C1orf122Q6ZSJ8 110 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 Q6ZSN1 163 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 Q6ZT83 130 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 RLN3Q8WXF3 142 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 C18orf15Q96N68 181 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 SHANK2-AS3Q9BTD1 123 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 DCTN5Q9BTE1 182 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 AAMDCQ9H7C9 122 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 NGBQ9NPG2 151 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 GAGE2DQ9UEU5 116 aa5.25□□□□□ -1.57
USP28-207ENST00000538475 TIMM8BQ9Y5J9 83 aaPredicted RBP5.25□□□□□ -1.57
USP28-207ENST00000538475 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 LY6G6EA0A0G2JKS1 128 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 LOC389332A0A1B0GUA5 103 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 PINLYPA6NC86 204 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 F8VRH5 84 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 NTN3O00634 580 aaPredicted RBP5.24□□□□□ -1.57
USP28-207ENST00000538475 FCN3O75636 299 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 IGHV3-13P01766 116 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 MT-ATP8P03928 68 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 FAM106CPP0CH98 169 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 SCGB1C2P0DMR2 95 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 ARL3P36405 182 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 WT1-ASQ06250 92 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 FAM106AQ4KMX7 169 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 TTC32Q5I0X7 151 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 GUSBP11Q6P575 273 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 Q6ZS52 159 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 C1orf210Q8IVY1 113 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 OR10J6PQ8NGY7 276 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 RNF5Q99942 180 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 FOXC2Q99958 501 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 TTTY12Q9BZ98 90 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 PROCRQ9UNN8 238 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 U3KQA8 63 aa5.24□□□□□ -1.57
USP28-207ENST00000538475 FAM186AA6NE01 2351 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 FABP5P3A8MUU1 101 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 H3BRN7 92 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 K7ERJ3 54 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 SNCGO76070 127 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 TNFRSF6BO95407 300 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 IGHG3P01860 377 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 IGKV1-16P04430 117 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 IFITM1P13164 125 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 WT1P19544 449 aaPredicted RBP5.23□□□□□ -1.57
USP28-207ENST00000538475 IGHV1-2P23083 117 aa5.23□□□□□ -1.57
USP28-207ENST00000538475 NDUFV3P56181 108 aaKnown RBP5.23□□□□□ -1.57
USP28-207ENST00000538475 RPL32P62910 135 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 3265 ms