RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-211	ENST00000494333	LSM5	Q9Y4Y9	91 aa	Known RBP	5.79	□□□□□ -1.48
RIF1-211	ENST00000494333	DYNC2H1	Q8NCM8	4307 aa	Known RBP	5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	TRAV8-2	A0A0B4J237	113 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	FAM240B	A0A1B0GVZ2	78 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	SMIM9	A6NGZ8	99 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	CBY3	A6NI87	242 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	ZNF705F	A8MVS1	300 aa	Predicted RBP	5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	ZNF705D	P0CH99	300 aa	Predicted RBP	5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	ZNF705B	P0CI00	300 aa	Predicted RBP	5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	RPL7	P18124	248 aa	Known RBP	5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	BCAP31	P51572	246 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	CAV2	P51636	162 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	SLC38A11	Q08AI6	406 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	C12orf74	Q32Q52	190 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	PATE2	Q6UY27	113 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	S100A7A	Q86SG5	101 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	C12orf45	Q8N5I9	185 aa	Predicted RBP	5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	PRR26	Q8N8Z3	221 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	LRRC20	Q8TCA0	184 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	GGACT	Q9BVM4	153 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	ARV1	Q9H2C2	271 aa		5.78	□□□□□ -1.48
RIF1-211	ENST00000494333	IGHV4-4	A0A075B6R2	117 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	DEFB131B	A0A096LNP1	70 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	TMEM189	A5PLL7	270 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	FAM24A	A6NFZ4	105 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333		K7EPK0	472 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	AGPAT2	O15120	278 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	HBE1	P02100	147 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	SPART-AS1	P0CW21	52 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	PVALB	P20472	110 aa	Predicted RBP	5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	CNN1	P51911	297 aa	Known RBP	5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	MZT2B	Q6NZ67	158 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	AMTN	Q6UX39	209 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	LINC00299	Q6ZSB3	139 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	C1orf158	Q8N1D5	194 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	RNF182	Q8N6D2	247 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	S100Z	Q8WXG8	99 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	C2orf50	Q96LR7	162 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	GOLT1B	Q9Y3E0	138 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	RFNG	Q9Y644	331 aa		5.77	□□□□□ -1.49
RIF1-211	ENST00000494333	SACS	Q9NZJ4	4579 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	GAGE10	A6NGK3	116 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	CST7	O76096	145 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	DUSP14	O95147	198 aa	Known RBP	5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	SNRPC	P09234	159 aa	Known RBP	5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	PRB4	P10163	310 aa	Predicted RBP	5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	CXCL3	P19876	107 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	CAMLG	P49069	296 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	S100A10	P60903	97 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	RAB31	Q13636	194 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	SPINK13	Q1W4C9	94 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	LINC00305	Q7Z4B0	112 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	ZNF546	Q86UE3	836 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	ZNF738	Q8NE65	137 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	IGF2BP2-AS1	Q96M15	143 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	MGST2	Q99735	147 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	TMEM208	Q9BTX3	173 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333	RNF24	Q9Y225	148 aa		5.76	□□□□□ -1.49
RIF1-211	ENST00000494333		A0A087X0K7	114 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333		A8MTW9	85 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333		M0R2Z0	102 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	MRPS12	O15235	138 aa	Known RBP	5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	COX7A2P2	O60397	106 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	RHOB	P62745	196 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	HIST1H1A	Q02539	215 aa	Predicted RBP	5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	IL15RA	Q13261	267 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	ASAH1	Q13510	395 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	PSG3	Q16557	428 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	RRN3P1	Q2M238	152 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	SERTAD4-AS1	Q5TG53	156 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	FAM222A	Q5U5X8	452 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	C10orf113	Q5VZT2	155 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	MIC13	Q5XKP0	118 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333		Q6ZRG5	221 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	NRARP	Q7Z6K4	114 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	BPIFA4P	Q86YQ2	179 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	TMEM252	Q8N6L7	170 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	OR11H7	Q8NGC8	314 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	TMEM37	Q8WXS4	190 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	RNF126	Q9BV68	326 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	C11orf1	Q9H5F2	150 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	DNAJC4	Q9NNZ3	241 aa		5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	YTHDF2	Q9Y5A9	579 aa	Known RBP	5.75	□□□□□ -1.49
RIF1-211	ENST00000494333	HYDIN	Q4G0P3	5121 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	TRAV12-2	A0A075B6T6	113 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333		H3BTX0	84 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	CRX	O43186	299 aa	Predicted RBP	5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	AMBP	P02760	352 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	PRM2	P04554	102 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	S100A11	P31949	105 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	SULT1A1	P50225	295 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	OR8A1	Q8NGG7	326 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	ENKUR	Q8TC29	256 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	RPUSD4	Q96CM3	377 aa	Known RBP	5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	NIPSNAP3B	Q9BS92	247 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	NDUFAF3	Q9BU61	184 aa		5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	GPN1	Q9HCN4	374 aa	Predicted RBP	5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	ZNF331	Q9NQX6	463 aa	Predicted RBP	5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	LYRM2	Q9NU23	88 aa	Predicted RBP	5.74	□□□□□ -1.49
RIF1-211	ENST00000494333	UQCC1	Q9NVA1	299 aa		5.74	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms