RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 YTHDF2Q9Y5A9 579 aaKnown RBP12.73□□□□□ -0.37
VIM-205ENST00000485947 IGHV3-66A0A0C4DH42 116 aa12.72□□□□□ -0.37
VIM-205ENST00000485947 F6UZH7 168 aa12.72□□□□□ -0.37
VIM-205ENST00000485947 PDE6DO43924 150 aa12.72□□□□□ -0.37
VIM-205ENST00000485947 SRSF3P84103 164 aaKnown RBP12.72□□□□□ -0.37
VIM-205ENST00000485947 BLNKQ8WV28 456 aa12.72□□□□□ -0.37
VIM-205ENST00000485947 RYR2Q92736 4967 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 TMEM250H0YL14 139 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 SRP19P09132 144 aaKnown RBP12.71□□□□□ -0.37
VIM-205ENST00000485947 ATP5G3P48201 142 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 PSG9Q00887 426 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 GUCA2BQ16661 112 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 LINC00322Q6ZN03 302 aaPredicted RBP12.71□□□□□ -0.37
VIM-205ENST00000485947 SLC50A1Q9BRV3 221 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 KRTAP17-1Q9BYP8 105 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 SLC35B3Q9H1N7 401 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 OTORQ9NRC9 128 aa12.71□□□□□ -0.37
VIM-205ENST00000485947 DYNC2H1Q8NCM8 4307 aaKnown RBP12.71□□□□□ -0.37
VIM-205ENST00000485947 GGTLC3B5MD39 225 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 NDUFB4O95168 129 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 SAMD13Q5VXD3 122 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 CCDC28AQ8IWP9 274 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 TMEM61Q8N0U2 210 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 MUC7Q8TAX7 377 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 Q9H3A6 140 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 AAMDCQ9H7C9 122 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 CLEC5AQ9NY25 188 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 MLXQ9UH92 298 aa12.7□□□□□ -0.38
VIM-205ENST00000485947 TMEM218A2RU14 115 aa12.69□□□□□ -0.38
VIM-205ENST00000485947 OR11H12B2RN74 326 aa12.69□□□□□ -0.38
VIM-205ENST00000485947 ATP6V1G1O75348 118 aa12.69□□□□□ -0.38
VIM-205ENST00000485947 RANP62826 216 aaKnown RBP12.69□□□□□ -0.38
VIM-205ENST00000485947 SUMO1P63165 101 aaKnown RBP12.69□□□□□ -0.38
VIM-205ENST00000485947 RBPMS2Q6ZRY4 209 aaKnown RBP12.69□□□□□ -0.38
VIM-205ENST00000485947 TCF24Q7RTU0 167 aa12.69□□□□□ -0.38
VIM-205ENST00000485947 ARL6IP6Q8N6S5 226 aa12.69□□□□□ -0.38
VIM-205ENST00000485947 C11orf52Q96A22 123 aa12.69□□□□□ -0.38
VIM-205ENST00000485947 SPAG8Q99932 426 aaPredicted RBP12.69□□□□□ -0.38
VIM-205ENST00000485947 PGPA6NDG6 321 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 KRBOX1C9JBD0 128 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 C9JQL5 133 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 H3BTX0 84 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 SNRPCP09234 159 aaKnown RBP12.68□□□□□ -0.38
VIM-205ENST00000485947 CD7P09564 240 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 EDN2P20800 178 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 FAM90A2PQ658T7 463 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 C5orf17Q8NAS9 161 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 C17orf77Q96MU5 243 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 NRN1Q9NPD7 142 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 ZNF331Q9NQX6 463 aaPredicted RBP12.68□□□□□ -0.38
VIM-205ENST00000485947 PRELID1Q9Y255 219 aa12.68□□□□□ -0.38
VIM-205ENST00000485947 TENM2Q9NT68 2774 aa12.67□□□□□ -0.38
VIM-205ENST00000485947 SLC17A3O00476 420 aa12.67□□□□□ -0.38
VIM-205ENST00000485947 TSPAN4O14817 238 aa12.67□□□□□ -0.38
VIM-205ENST00000485947 SFTA3P0C7M3 94 aa12.67□□□□□ -0.38
VIM-205ENST00000485947 HIST1H2BAQ96A08 127 aa12.67□□□□□ -0.38
VIM-205ENST00000485947 RPUSD4Q96CM3 377 aaKnown RBP12.67□□□□□ -0.38
VIM-205ENST00000485947 FAM110AQ9BQ89 295 aa12.67□□□□□ -0.38
VIM-205ENST00000485947 SACSQ9NZJ4 4579 aa12.66□□□□□ -0.38
VIM-205ENST00000485947 SLC25A5P05141 298 aaKnown RBP12.66□□□□□ -0.38
VIM-205ENST00000485947 S100A1P23297 94 aa12.66□□□□□ -0.38
VIM-205ENST00000485947 CYB561D1Q8N8Q1 229 aa12.66□□□□□ -0.38
VIM-205ENST00000485947 CMTM2Q8TAZ6 248 aa12.66□□□□□ -0.38
VIM-205ENST00000485947 MRPL53Q96EL3 112 aaKnown RBP12.66□□□□□ -0.38
VIM-205ENST00000485947 SEC11CQ9BY50 192 aa12.66□□□□□ -0.38
VIM-205ENST00000485947 SCO2A0A1W2PP80 73 aa12.65□□□□□ -0.38
VIM-205ENST00000485947 RPL11P62913 178 aaKnown RBP12.65□□□□□ -0.38
VIM-205ENST00000485947 DEFB125Q8N687 156 aa12.65□□□□□ -0.38
VIM-205ENST00000485947 SRD5A3Q9H8P0 318 aa12.65□□□□□ -0.38
VIM-205ENST00000485947 EDA2RQ9HAV5 297 aa12.65□□□□□ -0.38
VIM-205ENST00000485947 EPDR1Q9UM22 224 aa12.65□□□□□ -0.38
VIM-205ENST00000485947 TRAV2A0A0B4J234 112 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 SERTM2A0A1B0GWG4 89 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 F8W036 122 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 PEX7O00628 323 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 ISLRO14498 428 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 SOCS3O14543 225 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 CSN1S1P47710 185 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 CMC4P56277 68 aaPredicted RBP12.64□□□□□ -0.39
VIM-205ENST00000485947 PAFAH1B2P68402 229 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 FAM74A3Q4VXF1 159 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 SOHLH1Q5JUK2 328 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 EXOC3-AS1Q8N2X6 119 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 C16orf92Q96LL3 132 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 ATG101Q9BSB4 218 aa12.64□□□□□ -0.39
VIM-205ENST00000485947 RBMY1BA6NDE4 496 aaKnown RBP12.63□□□□□ -0.39
VIM-205ENST00000485947 RBMY1EA6NEQ0 496 aaKnown RBP12.63□□□□□ -0.39
VIM-205ENST00000485947 OR4C46A6NHA9 309 aa12.63□□□□□ -0.39
VIM-205ENST00000485947 RBMY1DP0C7P1 496 aaKnown RBP12.63□□□□□ -0.39
VIM-205ENST00000485947 ID1P41134 155 aa12.63□□□□□ -0.39
VIM-205ENST00000485947 C10orf91Q5T1B1 145 aa12.63□□□□□ -0.39
VIM-205ENST00000485947 CASC10Q5T4H9 136 aa12.63□□□□□ -0.39
VIM-205ENST00000485947 IL17DQ8TAD2 202 aa12.63□□□□□ -0.39
VIM-205ENST00000485947 PARLQ9H300 379 aa12.63□□□□□ -0.39
VIM-205ENST00000485947 CARHSP1Q9Y2V2 147 aaKnown RBP12.63□□□□□ -0.39
VIM-205ENST00000485947 TRAV8-2A0A0B4J237 113 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 K7EQM0 130 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 TCRAP04437 139 aa12.62□□□□□ -0.39
VIM-205ENST00000485947 S100A9P06702 114 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms