RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RNF141Q8WVD5 230 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 RNF183Q96D59 192 aa12.95□□□□□ -0.34
COL7A1-205ENST00000465238 A0A0J9YX75 114 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 BCL2L11O43521 198 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 ZNF253O75346 499 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 IGKV3-20P01619 116 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 OR10J4P0C629 311 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 NBEAP1P0C6P0 100 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 PDE6HQ13956 83 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 TMUB2Q71RG4 321 aa12.94□□□□□ -0.34
COL7A1-205ENST00000465238 RPUSD4Q96CM3 377 aaKnown RBP12.94□□□□□ -0.34
COL7A1-205ENST00000465238 ZNF471Q9BX82 626 aaPredicted RBP12.94□□□□□ -0.34
COL7A1-205ENST00000465238 DUSP14O95147 198 aaKnown RBP12.93□□□□□ -0.34
COL7A1-205ENST00000465238 CDC34P49427 236 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-205ENST00000465238 EIF5AP63241 154 aaKnown RBP12.93□□□□□ -0.34
COL7A1-205ENST00000465238 UBE2L3P68036 154 aaKnown RBP12.93□□□□□ -0.34
COL7A1-205ENST00000465238 TMEM41BQ5BJD5 291 aa12.93□□□□□ -0.34
COL7A1-205ENST00000465238 FXYD5Q96DB9 178 aa12.93□□□□□ -0.34
COL7A1-205ENST00000465238 HYLS1Q96M11 299 aa12.93□□□□□ -0.34
COL7A1-205ENST00000465238 ACTR3CQ9C0K3 210 aaPredicted RBP12.93□□□□□ -0.34
COL7A1-205ENST00000465238 EIF3GO75821 320 aaKnown RBP eCLIP12.92□□□□□ -0.34
COL7A1-205ENST00000465238 AKR1C8PQ5T2L2 129 aa12.92□□□□□ -0.34
COL7A1-205ENST00000465238 CEMP1Q6PRD7 247 aaPredicted RBP12.92□□□□□ -0.34
COL7A1-205ENST00000465238 PQLC2Q6ZP29 291 aa12.92□□□□□ -0.34
COL7A1-205ENST00000465238 RPP25LQ8N5L8 163 aaKnown RBP12.92□□□□□ -0.34
COL7A1-205ENST00000465238 CLUHP3Q96NS8 147 aa12.92□□□□□ -0.34
COL7A1-205ENST00000465238 AAMDCQ9H7C9 122 aa12.92□□□□□ -0.34
COL7A1-205ENST00000465238 ZNF705FA8MVS1 300 aaPredicted RBP12.91□□□□□ -0.34
COL7A1-205ENST00000465238 HMGB3O15347 200 aaKnown RBP12.91□□□□□ -0.34
COL7A1-205ENST00000465238 NDUFB4O95168 129 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 LY6G6CO95867 125 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 OR8A1Q8NGG7 326 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 RAB24Q969Q5 203 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 ZNF503Q96F45 646 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 C1QTNF4Q9BXJ3 329 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 PRELID1Q9Y255 219 aa12.91□□□□□ -0.34
COL7A1-205ENST00000465238 ZNF705DP0CH99 300 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-205ENST00000465238 ZNF705BP0CI00 300 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-205ENST00000465238 CNN1P51911 297 aaKnown RBP12.9□□□□□ -0.34
COL7A1-205ENST00000465238 HIST1H1AQ02539 215 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-205ENST00000465238 LGALSLQ3ZCW2 172 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-205ENST00000465238 KLK5Q9Y337 293 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-205ENST00000465238 STAG3L2P0CL84 134 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 STAG3L3P0CL85 134 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 C4BPBP20851 252 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 CD300CQ08708 224 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 ICAM4Q14773 271 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 ZFP69Q49AA0 526 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 EXOC3-AS1Q8N2X6 119 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 OR10J6PQ8NGY7 276 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 MRPL53Q96EL3 112 aaKnown RBP12.89□□□□□ -0.35
COL7A1-205ENST00000465238 PPP1R14DQ9NXH3 145 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 XCL2Q9UBD3 114 aa12.89□□□□□ -0.35
COL7A1-205ENST00000465238 GIG44P09565 113 aaPredicted RBP12.88□□□□□ -0.35
COL7A1-205ENST00000465238 SEC11BP0C7V7 166 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 ARL14EPLP0DKL9 152 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 PRB4P10163 310 aaPredicted RBP12.88□□□□□ -0.35
COL7A1-205ENST00000465238 TPT1P13693 172 aaKnown RBP12.88□□□□□ -0.35
COL7A1-205ENST00000465238 FXYD7P58549 80 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 RANP62826 216 aaKnown RBP12.88□□□□□ -0.35
COL7A1-205ENST00000465238 BAP18Q8IXM2 172 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 LYPD1Q8N2G4 141 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 PHYHIPLQ96FC7 376 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 SLC35B3Q9H1N7 401 aa12.88□□□□□ -0.35
COL7A1-205ENST00000465238 CTXND1A0A1B0GTU2 59 aa12.87□□□□□ -0.35
COL7A1-205ENST00000465238 A8MTW9 85 aa12.87□□□□□ -0.35
COL7A1-205ENST00000465238 PRAC2D3DTV9 90 aa12.87□□□□□ -0.35
COL7A1-205ENST00000465238 RARRES2Q99969 163 aa12.87□□□□□ -0.35
COL7A1-205ENST00000465238 M0R3E3 92 aa12.86□□□□□ -0.35
COL7A1-205ENST00000465238 CXorf1O96002 111 aa12.86□□□□□ -0.35
COL7A1-205ENST00000465238 CSN1S1P47710 185 aa12.86□□□□□ -0.35
COL7A1-205ENST00000465238 OR11H2Q8NH07 326 aa12.86□□□□□ -0.35
COL7A1-205ENST00000465238 Q9H3A6 140 aa12.86□□□□□ -0.35
COL7A1-205ENST00000465238 UMAD1C9J7I0 102 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 AMBPP02760 352 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 GCHFRP30047 84 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 FAM74A1Q5RGS3 127 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 AMTNQ6UX39 209 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 IQCF2Q8IXL9 164 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 CSNK1G2-AS1Q8NCQ2 148 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 STOML3Q8TAV4 291 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 PHLDA1Q8WV24 401 aaPredicted RBP12.85□□□□□ -0.35
COL7A1-205ENST00000465238 TMEM167BQ9NRX6 74 aa12.85□□□□□ -0.35
COL7A1-205ENST00000465238 ZNF726P1Q15940 193 aa12.84□□□□□ -0.35
COL7A1-205ENST00000465238 EIF5AL1Q6IS14 154 aaKnown RBP12.84□□□□□ -0.35
COL7A1-205ENST00000465238 SSX7Q7RTT5 188 aa12.84□□□□□ -0.35
COL7A1-205ENST00000465238 OTORQ9NRC9 128 aa12.84□□□□□ -0.35
COL7A1-205ENST00000465238 PGPA6NDG6 321 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 BOLA2-SMG1P6H3BVE0 249 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 SPINK13Q1W4C9 94 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 SLC51BQ86UW2 128 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 C9orf62Q8N4C0 152 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 CMTM2Q8TAZ6 248 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 RXFP4Q8TDU9 374 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 TMED6Q8WW62 240 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 C11orf68Q9H3H3 251 aaKnown RBP12.83□□□□□ -0.36
COL7A1-205ENST00000465238 KMT2AQ03164 3969 aa12.83□□□□□ -0.36
COL7A1-205ENST00000465238 NPIPB6E9PJ23 425 aa12.82□□□□□ -0.36
COL7A1-205ENST00000465238 M0R2Z0 102 aa12.82□□□□□ -0.36
COL7A1-205ENST00000465238 TSPOP30536 169 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms