RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 KLF12Q9Y4X4 402 aa5.14□□□□□ -1.59
LIMCH1-204ENST00000446625 E5RGE8 158 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 K7EQD1 137 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 RAB3DO95716 219 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 SNRPCP09234 159 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 CT45A10P0DMU9 189 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 SRIP30626 198 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 CCR6P51684 374 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 HNRNPA3P51991 378 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 RAB11AP62491 216 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 ZNF415Q09FC8 603 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 SLAQ13239 276 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 SMCO1Q147U7 214 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 STEAP1BQ6NZ63 245 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 TEPPQ6URK8 271 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 LINC00299Q6ZSB3 139 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 ZNF680Q8NEM1 530 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 MCFD2Q8NI22 146 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 CHAC1Q9BUX1 264 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 MRPL16Q9NX20 251 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 C14orf166Q9Y224 244 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 HIGD1AQ9Y241 93 aa5.13□□□□□ -1.59
LIMCH1-204ENST00000446625 TRAV5A0A0B4J249 113 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 IGHV3-38A0A0C4DH36 116 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 CRYM-AS1A6NIL9 109 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 PMS2P5A8MQ11 134 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 IBA57-AS1B1ANH7 110 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 PRSS46E5RG02 174 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 MRPS12O15235 138 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 RS1O15537 224 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 HYPMO75409 117 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 IAPPP10997 89 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 GYPEP15421 78 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 TBPP20226 339 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 TCL1AP56279 114 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 RAP2BP61225 183 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 LYZL2Q7Z4W2 148 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 ZBTB8BQ8NAP8 495 aaPredicted RBP5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 CIRBP-AS1Q8TBR5 109 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 DAZAP1Q96EP5 407 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 MRPL32Q9BYC8 188 aaKnown RBP5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 MIXL1Q9H2W2 232 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 ZNF331Q9NQX6 463 aaPredicted RBP5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 MTFP1Q9UDX5 166 aa5.12□□□□□ -1.59
LIMCH1-204ENST00000446625 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 A0A0B4J2A0 478 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 H3BTX0 84 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 CTDSP2O14595 271 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 LECT2O14960 151 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 RGS5O15539 181 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 IL5P05113 134 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 OR5G3P0C626 314 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 LEPP41159 167 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 TAS2R19P59542 299 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 AKR1C1Q04828 323 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 ANXA2RQ3ZCQ2 193 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 LINC01556Q5JQF7 62 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 MZT2AQ6P582 158 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 LCN15Q6UWW0 184 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 CYP2G1PQ6ZSU1 146 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 ACOT7LQ6ZUV0 252 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 EIF4E3Q8N5X7 224 aaKnown RBP5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 TMEM229BQ8NBD8 167 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 ODF3Q96PU9 254 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 VGLL1Q99990 258 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 SHPKQ9UHJ6 478 aa5.11□□□□□ -1.59
LIMCH1-204ENST00000446625 TRGV4A0A0C4DH28 118 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 C7orf71A4D174 169 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 SLC17A3O00476 420 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 IGLV2-8P01709 118 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 SLC25A5P05141 298 aaKnown RBP5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 SFTA3P0C7M3 94 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 LINC00869P0C866 280 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 AKR1C4P17516 323 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 CXCL2P19875 107 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 ANXA7P20073 488 aaKnown RBP5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 TNFSF8P32971 234 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 PLP1P60201 277 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 CD300CQ08708 224 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 PATE2Q6UY27 113 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 OR51S1Q8NGJ8 323 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 BLNKQ8WV28 456 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 PCNPQ8WW12 178 aaKnown RBP5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 AP3S1Q92572 193 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 SLC50A1Q9BRV3 221 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 DNAJC4Q9NNZ3 241 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 TP53TG3Q9ULZ0 132 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 GPR132Q9UNW8 380 aa5.1□□□□□ -1.59
LIMCH1-204ENST00000446625 DISC1C4P0D8 188 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 PITX3O75364 302 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 CCNKO75909 580 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 IGHV3-30P01768 117 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 IGHV3-33P01772 117 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 ORM1P02763 201 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 IGHV3-30-3P0DP02 117 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 IGHV3-30-5P0DP03 117 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 RPL37AP61513 92 aaKnown RBP5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 BTN1A1Q13410 526 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 IL18Q14116 193 aa5.09□□□□□ -1.59
LIMCH1-204ENST00000446625 SURF2Q15527 256 aaPredicted RBP5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms