RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 C1QL4Q86Z23 238 aa5.44□□□□□ -1.54
SF3B1-201ENST00000335508 MEGF9Q9H1U4 602 aa5.44□□□□□ -1.54
SF3B1-201ENST00000335508 C19orf84I3L1E1 186 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 RHODO00212 210 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 IGHV4-59P01825 116 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 MLANAQ16655 118 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 HAPLN4Q86UW8 402 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 TMEM183AQ8IXX5 376 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 K7EIM0 57 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 LGALS1P09382 135 aaKnown RBP5.43□□□□□ -1.54
SF3B1-201ENST00000335508 ZFP36P26651 326 aaKnown RBP5.43□□□□□ -1.54
SF3B1-201ENST00000335508 SYNJ2BPP57105 145 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 CKS1BP61024 79 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 RPL24P83731 157 aaKnown RBP5.43□□□□□ -1.54
SF3B1-201ENST00000335508 DIAPH2-AS1Q14236 149 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 VSIRQ9H7M9 311 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 NXT2Q9NPJ8 142 aaKnown RBP5.43□□□□□ -1.54
SF3B1-201ENST00000335508 ARHGAP32A7KAX9 2087 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 DLX1P56177 255 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 SPAG8Q99932 426 aaPredicted RBP5.43□□□□□ -1.54
SF3B1-201ENST00000335508 VAMP8Q9BV40 100 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 HIGD1CA8MV81 97 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 M0R143 59 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 PRB4P10163 310 aaPredicted RBP5.43□□□□□ -1.54
SF3B1-201ENST00000335508 OR1N2Q8NGR9 330 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 MYOZ3Q8TDC0 251 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 IZUMO1RA6ND01 250 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 SRIP30626 198 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 MAPK1IP1LQ8NDC0 245 aa5.43□□□□□ -1.54
SF3B1-201ENST00000335508 TRBV20OR9-2A0A075B6H5 130 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 CGB1A6NKQ9 187 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 M0R381 172 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 ATP5LO75964 103 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 IGF1P05019 195 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 HOXB4P17483 251 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-201ENST00000335508 CACNG7P62955 275 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 HERV-K104P63124 156 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 SPRNQ5BIV9 151 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 FAM90A2PQ658T7 463 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 MRPL18Q9H0U6 180 aaKnown RBP5.42□□□□□ -1.54
SF3B1-201ENST00000335508 TPSG1Q9NRR2 321 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 TRIOO75962 3097 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 SAP30O75446 220 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 IGHV3-23P01764 117 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 STHQ8IWL8 128 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 ZNF502Q8TBZ5 544 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 MRPL53Q96EL3 112 aaKnown RBP5.42□□□□□ -1.54
SF3B1-201ENST00000335508 ZNF492Q9P255 531 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 POLR3KQ9Y2Y1 108 aaPredicted RBP5.42□□□□□ -1.54
SF3B1-201ENST00000335508 LCN12Q6JVE5 192 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 MAP1LC3CQ9BXW4 147 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 TRAV5A0A0B4J249 113 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 CTSGP08311 255 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 GTSCR1Q86UQ5 136 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 OR8A1Q8NGG7 326 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 CEP192Q8TEP8 1941 aa5.42□□□□□ -1.54
SF3B1-201ENST00000335508 TRBV7-9A0A0J9YWB2 115 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 A0A1W2PRX2 142 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 MGPP08493 103 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 C11orf44Q8N8P7 122 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 CFHR4Q92496 578 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 RETNQ9HD89 108 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 SIVA1O15304 175 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 CTAG1AP78358 180 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 AMMECR1LQ6DCA0 310 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 C11orf42Q8N5U0 333 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 GSN-AS1Q9NRJ2 163 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 LINC01619G3V211 115 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 BLCAPP62952 87 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 TCF23Q7RTU1 214 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 GPHB5Q86YW7 130 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 DUX3Q96PT4 197 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 LAMTOR2Q9Y2Q5 125 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 TEX15Q9BXT5 2789 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 CBLN1P23435 193 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 TCTEX1D4Q5JR98 221 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 ODF3L1Q8IXM7 274 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 PRELID3AQ96N28 172 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 CNTFRP26992 372 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 MRAPQ8TCY5 172 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 PGLYRP4Q96LB8 373 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 LINC01587Q99440 93 aa5.41□□□□□ -1.54
SF3B1-201ENST00000335508 CLPSL1A2RUU4 121 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 H3BRN7 92 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 TRGV2A0A075B6R0 118 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 IGHV7-4-1A0A0J9YVY3 117 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 I3L2K1 104 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 SLC17A3O00476 420 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 IGKV3-20P01619 116 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 IGHV4-38-2P0DP08 117 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 FOXA3P55318 350 aaPredicted RBP5.4□□□□□ -1.54
SF3B1-201ENST00000335508 ZNF493Q6ZR52 646 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 MBD6Q96DN6 1003 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 SIGMAR1Q99720 223 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 GNB1LQ9BYB4 327 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 TNFRSF18Q9Y5U5 241 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 Q86TA4 180 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 EXOC3-AS1Q8N2X6 119 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 OR11H1Q8NG94 326 aa5.4□□□□□ -1.54
SF3B1-201ENST00000335508 COX11Q9Y6N1 276 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms