RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 hADV29S1A0JD25 119 aa6.48□□□□□ -1.37
CIITA-201ENST00000324288 IGHV3-16A0A0C4DH30 117 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 LINC01549A6NIU2 74 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 SPXQ9BT56 116 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 MST1P26927 711 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 SLC50A1Q9BRV3 221 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 IGKV1-12A0A0C4DH73 117 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 IGKV1D-12P01611 117 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 METRNQ9UJH8 293 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 TMEM213A2RRL7 107 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 DTX2Q86UW9 622 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 RNASE6Q93091 150 aaKnown RBP6.47□□□□□ -1.37
CIITA-201ENST00000324288 ABCA12Q86UK0 2595 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 PRCDQ00LT1 54 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 CTHRC1Q96CG8 243 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 LY6HO94772 140 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 NTF4P34130 210 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 ZNF329Q86UD4 541 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 SP7Q8TDD2 431 aaPredicted RBP6.47□□□□□ -1.37
CIITA-201ENST00000324288 ID3Q02535 119 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 PVRIGQ6DKI7 326 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 SLC25A39Q9BZJ4 359 aaPredicted RBP6.47□□□□□ -1.37
CIITA-201ENST00000324288 TRAV25A0A0B4J276 109 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 AMTNQ6UX39 209 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 C8orf49Q96NF6 230 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 C5orf63A6NC05 138 aa6.47□□□□□ -1.37
CIITA-201ENST00000324288 SLC25A48Q6ZT89 311 aaKnown RBP6.47□□□□□ -1.37
CIITA-201ENST00000324288 FLG2Q5D862 2391 aaPredicted RBP6.47□□□□□ -1.37
CIITA-201ENST00000324288 VCYO14598 125 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 WDR83OSQ9Y284 106 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 F2Z2F3 143 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 MST1LQ2TV78 715 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 KLHDC3Q9BQ90 382 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 MYMXA0A1B0GTQ4 84 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 FOXG1P55316 489 aaPredicted RBP6.46□□□□□ -1.37
CIITA-201ENST00000324288 SMPXQ9UHP9 88 aa6.46□□□□□ -1.37
CIITA-201ENST00000324288 DUSP14O95147 198 aaKnown RBP6.46□□□□□ -1.38
CIITA-201ENST00000324288 LINC00205P59089 165 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 Q71RC1 249 aaPredicted RBP6.46□□□□□ -1.38
CIITA-201ENST00000324288 KLHL30-AS1Q8NEE0 82 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 LTBP4Q8N2S1 1624 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.46□□□□□ -1.38
CIITA-201ENST00000324288 K7EP13 123 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 RNF144BQ7Z419 303 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 MAPK1IP1LQ8NDC0 245 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 IGKV1-5P01602 117 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 SMIM20Q8N5G0 67 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 MSRB2Q9Y3D2 182 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 NLRC5Q86WI3 1866 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 GAGE12HA6NDE8 117 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 LYPD3O95274 346 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 MLANAQ16655 118 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 PAQR4Q8N4S7 273 aaPredicted RBP6.46□□□□□ -1.38
CIITA-201ENST00000324288 WBP1Q96G27 269 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 HAMPP81172 84 aa6.46□□□□□ -1.38
CIITA-201ENST00000324288 USP9XQ93008 2570 aaPredicted RBP6.45□□□□□ -1.38
CIITA-201ENST00000324288 IGHV2-26A0A0B4J1V2 119 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 IGHV1-46P01743 117 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 TREML4Q6UXN2 200 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 TRAV1-1A0A0B4J248 108 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 DUTP33316 252 aaKnown RBP6.45□□□□□ -1.38
CIITA-201ENST00000324288 IGHV1-18A0A0C4DH31 117 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 CCL25O15444 150 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 GAS1P54826 345 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 C20orf144Q9BQM9 153 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 ARMS2P0C7Q2 107 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 SUPT4H1P63272 117 aaKnown RBP6.45□□□□□ -1.38
CIITA-201ENST00000324288 C15orf53Q8NAA6 179 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 LRRC37AA6NMS7 1700 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 GAGE12JA6NER3 117 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 GHRHP01286 108 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 IGLV3-21P80748 117 aaPredicted RBP6.45□□□□□ -1.38
CIITA-201ENST00000324288 GAGE4Q13068 117 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 GAGE5Q13069 117 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 GAGE6Q13070 117 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 KNCNA6PVL3 124 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 RBMY1FQ15415 496 aaKnown RBP6.45□□□□□ -1.38
CIITA-201ENST00000324288 PRIMA1Q86XR5 153 aa6.45□□□□□ -1.38
CIITA-201ENST00000324288 RPP25LQ8N5L8 163 aaKnown RBP6.45□□□□□ -1.38
CIITA-201ENST00000324288 MRPL23Q16540 153 aaKnown RBP6.44□□□□□ -1.38
CIITA-201ENST00000324288 PIP4P2Q8N4L2 257 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 TRAV26-2A0A0B4J265 109 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 YPEL1O60688 119 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 C6orf226Q5I0X4 101 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 YPEL2Q96QA6 119 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 GAGE7O76087 117 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 GAGE12FP0CL80 117 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 GAGE12GP0CL81 117 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 GAGE12IP0CL82 117 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 SCRT2Q9NQ03 307 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 KLF2Q9Y5W3 355 aaPredicted RBP6.44□□□□□ -1.38
CIITA-201ENST00000324288 A0A0G2JMZ2 1700 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 LRRC37A2A6NM11 1700 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 OVOL1O14753 267 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 NMSQ5H8A3 153 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 OVOL2Q9BRP0 275 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 H3BUX3 64 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 SOCS3O14543 225 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 DKK1O94907 266 aa6.44□□□□□ -1.38
CIITA-201ENST00000324288 SPACA3Q8IXA5 215 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms