RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 C21orf62Q9NYP8 219 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF492Q9P255 531 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 KLF13Q9Y2Y9 288 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-213ENST00000636759 WDR87Q6ZQQ6 2873 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 TRAV2A0A0B4J234 112 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 PGPA6NDG6 321 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 IGHG4P01861 327 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 PYYP10082 97 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 HSPE1P61604 102 aaKnown RBP5.48□□□□□ -1.53
SCN1A-213ENST00000636759 PLGLB1Q02325 96 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 DUX5Q96PT3 197 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 FOXC2Q99958 501 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 FGF23Q9GZV9 251 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-213ENST00000636759 AAMDCQ9H7C9 122 aa5.48□□□□□ -1.53
SCN1A-213ENST00000636759 A0A096LNJ9 63 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 IGHV3-15A0A0B4J1V0 119 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 PATE3B3GLJ2 98 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 D6R8Y8 96 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 PRSS46E5RG02 174 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 ZFAND5O76080 213 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 NGFP01138 241 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 SRSF9Q13242 221 aaKnown RBP eCLIP5.47□□□□□ -1.53
SCN1A-213ENST00000636759 DEFB123Q8N688 67 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 OR2H1Q9GZK4 316 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 ARMS2P0C7Q2 107 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 COX6A1P12074 109 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 SPINK2P20155 84 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 FOXG1P55316 489 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-213ENST00000636759 MORN3Q6PF18 240 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-213ENST00000636759 ZNF837Q96EG3 531 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-213ENST00000636759 PRSS22Q9GZN4 317 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 EDA2RQ9HAV5 297 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 ATP5LO75964 103 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 NPYP01303 97 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 FKBP2P26885 142 aaKnown RBP5.47□□□□□ -1.53
SCN1A-213ENST00000636759 B3GALT5-AS1P59052 145 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 ZFP2Q6ZN57 461 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 OR4C13Q8NGP0 309 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 SRSF12Q8WXF0 261 aaKnown RBP5.47□□□□□ -1.53
SCN1A-213ENST00000636759 CHCHD5Q9BSY4 110 aa5.47□□□□□ -1.53
SCN1A-213ENST00000636759 ZFHX3Q15911 3703 aa5.46□□□□□ -1.53
SCN1A-213ENST00000636759 A0A0J9YW62 118 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 SLC25A20O43772 301 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 OR2H2O95918 312 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 CELA2AP08217 269 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF883P0CG24 379 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 HLA-DRB4P13762 266 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 FOXC1Q12948 553 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 ZNF497Q6ZNH5 498 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 VKORC1L1Q8N0U8 176 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 OR11H6Q8NGC7 330 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 OR13A1Q8NGR1 328 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 C1orf159Q96HA4 380 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 FMC1Q96HJ9 113 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 LINC01587Q99440 93 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 C7orf69Q9H7B7 122 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 PROCRQ9UNN8 238 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 HLA-DRB4X5D2U9 266 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 TMEM30CPA0ZSE6 113 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 DUSP14O95147 198 aaKnown RBP5.46□□□□□ -1.54
SCN1A-213ENST00000636759 NDUFA7O95182 113 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 TMEM155Q4W5P6 130 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 C10orf113Q5VZT2 155 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 SCGB1D4Q6XE38 83 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 FAM57AQ8TBR7 257 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 TANC2Q9HCD6 1990 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 CABIN1Q9Y6J0 2220 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 LINC00473A8K010 186 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 SS18L1O75177 396 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-213ENST00000636759 ORM2P19652 201 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 DUTP33316 252 aaKnown RBP5.46□□□□□ -1.54
SCN1A-213ENST00000636759 CKS2P33552 79 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 LINC00205P59089 165 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 HERVK_113P63121 156 aa5.46□□□□□ -1.54
SCN1A-213ENST00000636759 LINC00322Q6ZN03 302 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-213ENST00000636759 AGRNO00468 2067 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TRGV8A0A0C4DH27 118 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TNFRSF1AP19438 455 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 BRWD1-AS2P59051 145 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 LINC01559Q495D7 138 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TMEM105Q8N8V8 129 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 FLYWCH2Q96CP2 140 aaKnown RBP5.45□□□□□ -1.54
SCN1A-213ENST00000636759 S1PR3Q99500 378 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 FOXB1Q99853 325 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 SPANXCQ9NY87 97 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 CALYQ9NYX4 217 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 HHLA3Q9XRX5 114 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 RAXQ9Y2V3 346 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 LOC400499M0QZD8 3231 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 C19orf71A6NCJ1 209 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TCL1BO95988 128 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 CCL4P13236 92 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 MRAPQ8TCY5 172 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TIMD4Q96H15 378 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TMEM101Q96IK0 257 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 HCFC1P51610 2035 aa5.45□□□□□ -1.54
SCN1A-213ENST00000636759 TRBV7-3A0A075B6L6 115 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 IGHV3-43A0A0B4J1X8 118 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 TRAV40A0A0B4J280 105 aa5.44□□□□□ -1.54
SCN1A-213ENST00000636759 A0A1B0GX51 115 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms