RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NPCDR1Q9BY65 106 aa13.71□□□□□ -0.21
CDX1-202ENST00000616154 X6R8D5 127 aa13.71□□□□□ -0.21
CDX1-202ENST00000616154 BORCS7-ASMTA0A0B4J1R7 106 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 AGPAT2O15120 278 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 FGF7P21781 194 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 HLA-DMBP28068 263 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 LYZP61626 148 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 SNRPD3P62318 126 aaKnown RBP13.7□□□□□ -0.22
CDX1-202ENST00000616154 SELENOTP62341 195 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 ACTL10Q5JWF8 245 aa13.7□□□□□ -0.22
CDX1-202ENST00000616154 SOCS3O14543 225 aa13.69□□□□□ -0.22
CDX1-202ENST00000616154 RPL29P47914 159 aaKnown RBP13.69□□□□□ -0.22
CDX1-202ENST00000616154 PSMG4Q5JS54 123 aa13.69□□□□□ -0.22
CDX1-202ENST00000616154 CYP2G1PQ6ZSU1 146 aa13.69□□□□□ -0.22
CDX1-202ENST00000616154 CSNK1G2-AS1Q8NCQ2 148 aa13.69□□□□□ -0.22
CDX1-202ENST00000616154 TIMM9Q9Y5J7 89 aa13.69□□□□□ -0.22
CDX1-202ENST00000616154 ELOA3CA0A087WX78 387 aaPredicted RBP13.68□□□□□ -0.22
CDX1-202ENST00000616154 TRAV10A0A0B4J240 114 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 LINC00869P0C866 280 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 CAMLGP49069 296 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 RAB31Q13636 194 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 TMEM182Q6ZP80 229 aaPredicted RBP13.68□□□□□ -0.22
CDX1-202ENST00000616154 Q6ZTC4 211 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 SLC51BQ86UW2 128 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 SCGB1C1Q8TD33 95 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 BOLA1Q9Y3E2 137 aa13.68□□□□□ -0.22
CDX1-202ENST00000616154 ATP6V0CP27449 155 aa13.67□□□□□ -0.22
CDX1-202ENST00000616154 PLP1P60201 277 aa13.67□□□□□ -0.22
CDX1-202ENST00000616154 BPIFCQ8NFQ6 507 aa13.67□□□□□ -0.22
CDX1-202ENST00000616154 PSMG3Q9BT73 122 aaPredicted RBP13.67□□□□□ -0.22
CDX1-202ENST00000616154 ZNF471Q9BX82 626 aaPredicted RBP13.67□□□□□ -0.22
CDX1-202ENST00000616154 CLEC5AQ9NY25 188 aa13.67□□□□□ -0.22
CDX1-202ENST00000616154 PSMB3P49720 205 aa13.66□□□□□ -0.22
CDX1-202ENST00000616154 EIF5AP63241 154 aaKnown RBP13.66□□□□□ -0.22
CDX1-202ENST00000616154 SAMD13Q5VXD3 122 aa13.66□□□□□ -0.22
CDX1-202ENST00000616154 OR2G3Q8NGZ4 309 aa13.66□□□□□ -0.22
CDX1-202ENST00000616154 GNPNAT1Q96EK6 184 aaPredicted RBP13.66□□□□□ -0.22
CDX1-202ENST00000616154 RSG1Q9BU20 258 aa13.66□□□□□ -0.22
CDX1-202ENST00000616154 KCNIP2Q9NS61 270 aa13.66□□□□□ -0.22
CDX1-202ENST00000616154 IGHV4-4A0A075B6R2 117 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 H3BMM0 161 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 TPT1P13693 172 aaKnown RBP13.65□□□□□ -0.22
CDX1-202ENST00000616154 HLA-DRB4P13762 266 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 BAP18Q8IXM2 172 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 HSD17B11Q8NBQ5 300 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 CLUHP3Q96NS8 147 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 HLA-DRB4X5D2U9 266 aa13.65□□□□□ -0.22
CDX1-202ENST00000616154 ZNF98A6NK75 572 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 C17orf112F2Z3M2 114 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 ISLRO14498 428 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 GATA2P23769 480 aaPredicted RBP13.64□□□□□ -0.23
CDX1-202ENST00000616154 S100A7P31151 101 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 MEOX2P50222 304 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 PXDC1Q5TGL8 231 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 MIC13Q5XKP0 118 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 OR8I2Q8N0Y5 310 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 ZNF709Q8N972 641 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 C17orf77Q96MU5 243 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 C1QTNF4Q9BXJ3 329 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 SH3BGRL3Q9H299 93 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 SLC39A9Q9NUM3 307 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 RFNGQ9Y644 331 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 PXMP4Q9Y6I8 212 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 FAT2Q9NYQ8 4349 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 SEC11BP0C7V7 166 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 SERF2P84101 59 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 GPR82Q96P67 336 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 SLC25A32Q9H2D1 315 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 CELA1Q9UNI1 258 aa13.64□□□□□ -0.23
CDX1-202ENST00000616154 DNAH17Q9UFH2 4485 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 H3BRN7 92 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 AMBPP02760 352 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 ID1P41134 155 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 B2MP61769 119 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 NUTF2P61970 127 aaKnown RBP13.63□□□□□ -0.23
CDX1-202ENST00000616154 C12orf74Q32Q52 190 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 FOXI2Q6ZQN5 318 aa13.63□□□□□ -0.23
CDX1-202ENST00000616154 DNAH2Q9P225 4427 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 KIAA1109Q2LD37 5005 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 ORM2P19652 201 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 GALR1P47211 349 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 SPATA31B1PQ5VZV4 182 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 OR1B1Q8NGR6 318 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 SHANK2-AS3Q9BTD1 123 aa13.62□□□□□ -0.23
CDX1-202ENST00000616154 SAV1Q9H4B6 383 aaPredicted RBP13.62□□□□□ -0.23
CDX1-202ENST00000616154 DEFB131BA0A096LNP1 70 aa13.61□□□□□ -0.23
CDX1-202ENST00000616154 PATE2Q6UY27 113 aa13.61□□□□□ -0.23
CDX1-202ENST00000616154 PHYHIPLQ96FC7 376 aa13.61□□□□□ -0.23
CDX1-202ENST00000616154 SLC25A39Q9BZJ4 359 aaPredicted RBP13.61□□□□□ -0.23
CDX1-202ENST00000616154 PLA2G2EQ9NZK7 142 aa13.61□□□□□ -0.23
CDX1-202ENST00000616154 XCL2Q9UBD3 114 aa13.61□□□□□ -0.23
CDX1-202ENST00000616154 A8MTW9 85 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 FFAR4Q5NUL3 377 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 GDF5OSQ5U4N7 250 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 Q6ZRG5 221 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 LINC00336Q6ZUF6 198 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 ZNF767PQ75MW2 155 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 TMEM37Q8WXS4 190 aa13.6□□□□□ -0.23
CDX1-202ENST00000616154 SCRT1Q9BWW7 348 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms