RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ZNF503Q96F45 646 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 MRPL36Q9P0J6 103 aaKnown RBP4.45□□□□□ -1.7
CUX1-220ENST00000607092 CACNG5Q9UF02 275 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 GPR132Q9UNW8 380 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 FLVCR2Q9UPI3 526 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 HSPG2P98160 4391 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 LRP1BQ9NZR2 4599 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 HMSDA8MTL9 139 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 A8MTW9 85 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 F5H768 121 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 NUDT3O95989 172 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 AKR1C4P17516 323 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 CXCL3P19876 107 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 PI3P19957 117 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 ANXA7P20073 488 aaKnown RBP4.44□□□□□ -1.7
CUX1-220ENST00000607092 RAB11AP62491 216 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 RPP30P78346 268 aaKnown RBP4.44□□□□□ -1.7
CUX1-220ENST00000607092 CYCSP99999 105 aaKnown RBP4.44□□□□□ -1.7
CUX1-220ENST00000607092 FGL1Q08830 312 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 MLANAQ16655 118 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 C4orf46Q504U0 113 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 TMEM268Q5VZI3 342 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 ZNF493Q6ZR52 646 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 ZNF709Q8N972 641 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 OR1B1Q8NGR6 318 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 ZNRF2Q8NHG8 242 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 DTD1Q8TEA8 209 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 MITD1Q8WV92 249 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 SCRT1Q9BWW7 348 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 NAA60Q9H7X0 242 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 SCRT2Q9NQ03 307 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 PPP1R14DQ9NXH3 145 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 TMEM56-RWDD3S4R434 201 aa4.44□□□□□ -1.7
CUX1-220ENST00000607092 C9orf170A2RU37 121 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 SOCS3O14543 225 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 OR5AC1P0C628 307 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 DEFB130BP0DP73 79 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 DEFB130AP0DP74 79 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 LYZP61626 148 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 GAMTQ14353 236 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 SP6Q3SY56 376 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 GDF5OSQ5U4N7 250 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 FAAP20Q6NZ36 180 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 SPATA12Q7Z6I5 190 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 C1orf158Q8N1D5 194 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 BPIFCQ8NFQ6 507 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 OR2T35Q8NGX2 323 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 GLYATL2Q8WU03 294 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 CIB3Q96Q77 187 aaPredicted RBP4.43□□□□□ -1.7
CUX1-220ENST00000607092 TRGV9Q99603 122 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 SEC22CQ9BRL7 303 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 SLC35B3Q9H1N7 401 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 MGAT4CQ9UBM8 478 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 HSPB7Q9UBY9 170 aa4.43□□□□□ -1.7
CUX1-220ENST00000607092 TIMM8BQ9Y5J9 83 aaPredicted RBP4.43□□□□□ -1.7
CUX1-220ENST00000607092 A0A0G2JRQ6 117 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 DUXBA0A1W2PPF3 345 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 CRYM-AS1A6NIL9 109 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 EPM2AB3EWF7 344 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 H3BNG1 76 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 MED6O75586 246 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 SFT2D2O95562 160 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 RPL7P18124 248 aaKnown RBP4.42□□□□□ -1.7
CUX1-220ENST00000607092 FXYD7P58549 80 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 TAS2R60P59551 318 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 IFITM2Q01629 132 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 SMCO1Q147U7 214 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 SSX7Q7RTT5 188 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 TMED4Q7Z7H5 227 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 CCDC28AQ8IWP9 274 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 SELENOHQ8IZQ5 122 aaKnown RBP4.42□□□□□ -1.7
CUX1-220ENST00000607092 MARCH1Q8TCQ1 289 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 GPR146Q96CH1 333 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 C16orf74Q96GX8 76 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 C20orf144Q9BQM9 153 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 RTBDNQ9BSG5 229 aaPredicted RBP4.42□□□□□ -1.7
CUX1-220ENST00000607092 UPK3BQ9BT76 320 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 TMEM147Q9BVK8 224 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 KRTAP4-5Q9BYR2 181 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 Q9H3A6 140 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 Q9H8V8 135 aa4.42□□□□□ -1.7
CUX1-220ENST00000607092 NACAE9PAV3 2078 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 A0A0D9SG52 128 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 H7BYZ3 331 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 M6PRP20645 277 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 CNN1P51911 297 aaKnown RBP4.41□□□□□ -1.7
CUX1-220ENST00000607092 NKX2-5P52952 324 aaPredicted RBP4.41□□□□□ -1.7
CUX1-220ENST00000607092 SELENOTP62341 195 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 RHOBP62745 196 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 PPP1R1AQ13522 171 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 LGALSLQ3ZCW2 172 aaPredicted RBP4.41□□□□□ -1.7
CUX1-220ENST00000607092 TEPPQ6URK8 271 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 AMTNQ6UX39 209 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 TMEM144Q7Z5S9 345 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 C9orf62Q8N4C0 152 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 THAP8Q8NA92 274 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 OR1S1Q8NH92 325 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 LRRC20Q8TCA0 184 aa4.41□□□□□ -1.7
CUX1-220ENST00000607092 TMEM263Q8WUH6 116 aaKnown RBP4.41□□□□□ -1.7
CUX1-220ENST00000607092 GNPNAT1Q96EK6 184 aaPredicted RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms