RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CXCL3P19876 107 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 SELENOTP62341 195 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 DLK1P80370 383 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 PATE2Q6UY27 113 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 ZNF575Q86XF7 245 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 C15orf53Q8NAA6 179 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 OR10P1Q8NGE3 313 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 RPUSD4Q96CM3 377 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 ARV1Q9H2C2 271 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 NPVFQ9HCQ7 196 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 MUC4Q99102 2169 aa12.39□□□□□ -0.43
SHKBP1-223ENST00000600552 NAP1L6A6NFF2 107 aa12.38□□□□□ -0.43
SHKBP1-223ENST00000600552 B2MP61769 119 aa12.38□□□□□ -0.43
SHKBP1-223ENST00000600552 S100A7AQ86SG5 101 aa12.38□□□□□ -0.43
SHKBP1-223ENST00000600552 DYNC1H1Q14204 4646 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-223ENST00000600552 TEPPQ6URK8 271 aa12.37□□□□□ -0.43
SHKBP1-223ENST00000600552 TMEM14EPQ6UXP3 125 aa12.37□□□□□ -0.43
SHKBP1-223ENST00000600552 ZBTB8BQ8NAP8 495 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-223ENST00000600552 PARD6GQ9BYG4 376 aaPredicted RBP12.37□□□□□ -0.43
SHKBP1-223ENST00000600552 PKD1P98161 4303 aa12.37□□□□□ -0.43
SHKBP1-223ENST00000600552 A0A087X0K7 114 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 CENPXA8MT69 81 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 J3KRW8 73 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 COX7A2P2O60397 106 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 ATP5G1P05496 136 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 ATP5G3P48201 142 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 PLP1P60201 277 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 ARL16Q0P5N6 197 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 LINC00305Q7Z4B0 112 aa12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 NOP10Q9NPE3 64 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 RCL1Q9Y2P8 373 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-223ENST00000600552 PLAC8L1A1L4L8 177 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 FAM25EA8MYX2 175 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 L7N2F9 121 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 CCSO14618 274 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 AGPAT2O15120 278 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 TSPOP30536 169 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 BCAP31P51572 246 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 TAS2R60P59551 318 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 VAMP2P63027 116 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 CLINT1Q14677 625 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 KIR3DS1Q14943 382 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 TMEM256Q8N2U0 113 aa12.35□□□□□ -0.43
SHKBP1-223ENST00000600552 CBY3A6NI87 242 aa12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 CDKN1BP46527 198 aa12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 OR5I1Q13606 314 aa12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 ZNF546Q86UE3 836 aa12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 C16orf74Q96GX8 76 aa12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 LSM5Q9Y4Y9 91 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 TIMM8BQ9Y5J9 83 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 DNAH11Q96DT5 4516 aa12.34□□□□□ -0.43
SHKBP1-223ENST00000600552 PRAC2D3DTV9 90 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 TSC22D2O75157 780 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 MBPP02686 304 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 CCL18P55774 89 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 ZNF846Q147U1 533 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 C10orf113Q5VZT2 155 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 LCN15Q6UWW0 184 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 OR10J6PQ8NGY7 276 aa12.33□□□□□ -0.44
SHKBP1-223ENST00000600552 NBDYA0A0U1RRE5 68 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 C7orf66A4D0T2 115 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 MRPS12O15235 138 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 BTCP35070 178 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 FAM3BP58499 235 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 TNP2Q05952 138 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 MORN5Q5VZ52 161 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 BPIFA4PQ86YQ2 179 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 RNF141Q8WVD5 230 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 MGST2Q99735 147 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 RBM38Q9H0Z9 239 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 ZNF331Q9NQX6 463 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 RNF24Q9Y225 148 aa12.32□□□□□ -0.44
SHKBP1-223ENST00000600552 TRAV5A0A0B4J249 113 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 A0A0J9YY99 117 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 FNDC10F2Z333 226 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 SLC17A3O00476 420 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 TAS2R30P59541 319 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 PXDC1Q5TGL8 231 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 CCDC28AQ8IWP9 274 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 ZNRF2Q8NHG8 242 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 SDHCQ99643 169 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 SLC50A1Q9BRV3 221 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 LINC00588Q9Y4M8 146 aa12.31□□□□□ -0.44
SHKBP1-223ENST00000600552 GAGE12BA1L429 117 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 C5orf51A6NDU8 294 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 H7BYZ3 331 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 K7EPK0 472 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 GAGE7O76087 117 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 CST7O76096 145 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 GAGE12FP0CL80 117 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 GAGE12GP0CL81 117 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 GAGE12IP0CL82 117 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 CAMLGP49069 296 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 CAV2P51636 162 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 OPCMLQ14982 345 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 MIC13Q5XKP0 118 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 C6orf223Q8N319 242 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 MITD1Q8WV92 249 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 TMEM37Q8WXS4 190 aa12.3□□□□□ -0.44
SHKBP1-223ENST00000600552 RYR1P21817 5038 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms